Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13080 542 / 0 EST2, ATMRP3, ABCC3 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) AT3G13090 476 / 1e-155 ATMRP8, ATABCC6 ATP-binding cassette C6, multidrug resistance-associated protein 8 (.1) AT3G13100 464 / 2e-151 ATMRP7, ABCC7 ATP-binding cassette C7, multidrug resistance-associated protein 7 (.1) AT1G04120 367 / 5e-115 ATABCC5, ABCC5, ATMRP5 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2) AT3G60160 348 / 2e-108 ATMRP9, ABCC9 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1) AT3G59140 265 / 4e-79 ATMRP14, ABCC10 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) AT2G47800 243 / 4e-71 EST3, ATMRP4, ABCC4 ATP-binding cassette C4, multidrug resistance-associated protein 4 (.1) AT3G62700 233 / 9e-68 ATMRP10, ABCC14 ATP-binding cassette C14, multidrug resistance-associated protein 10 (.1) AT3G21250 219 / 5e-63 ATMRP6, ABCC8 ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 6, ATP-binding cassette C8, multidrug resistance-associated protein 6 (.1.2) AT3G60970 202 / 2e-57 ATMRP15, ABCC15 ATP-binding cassette C15, multidrug resistance-associated protein 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030718 [exp] 706 / 0 AT3G13080 1249 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Lus10022858 [exp] 365 / 3e-114 AT1G04120 2341 / 0.0 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2) Lus10018027 [exp] 339 / 6e-105 AT3G60160 1863 / 0.0 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1) Lus10042023 [exp] 336 / 6e-104 AT3G60160 1869 / 0.0 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1) Lus10022244 [exp] 297 / 3e-98 AT3G13090 246 / 6e-73 ATP-binding cassette C6, multidrug resistance-associated protein 8 (.1) Lus10027567 [exp] 278 / 2e-83 AT3G59140 2001 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Lus10039320 [exp] 274 / 7e-82 AT3G59140 1991 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Lus10017548 [exp] 257 / 5e-76 AT3G59140 1544 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Lus10011498 [exp] 251 / 7e-74 AT2G47800 1796 / 0.0 ATP-binding cassette C4, multidrug resistance-associated protein 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G362300 [exp] 575 / 0 AT3G13080 2008 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.001G362200 [exp] 540 / 6e-180 AT3G13080 1952 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.003G197200 [exp] 523 / 6e-174 AT3G13080 1832 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.T124606 [exp] 523 / 1e-173 AT3G13080 1830 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.003G198401 [exp] 523 / 2e-173 AT3G13080 1827 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.T125806 [exp] 523 / 3e-173 AT3G13080 1826 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.T124506 [exp] 518 / 3e-171 AT3G13080 1847 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.T124406 [exp] 516 / 1e-170 AT3G13080 1847 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.003G197100 [exp] 514 / 5e-170 AT3G13080 1842 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.003G197101 [exp] 513 / 2e-169 AT3G13080 1862 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0241 [flax] [poplar] ABC_membrane PF00664 [flax] [poplar] ABC_membrane ABC transporter transmembrane region
Representative CDS sequence Show only first row Show all	>Lus10030717 pacid=23155210 polypeptide=Lus10030717 locus=Lus10030717.g ID=Lus10030717.BGIv1.0 annot-version=v1.0 ATGGAAGAAGAGCCTCTTTTGGTTCAAGAGCCAAATAAGTCCACCAAAGGGGATAGCAGTGTGACTCCTTATTCATATGCTGGTGTGTTTGGTATTGTTT CTTTCTCATGGATGGGTCCACTGATTGCACTTGGAAATAACAAGGCTTTAGACATTGAAGATGTTCCTCAGCTTTATAAAAAAGATAGTGTTGTGGGTGC ATTCTCGTCTCTAAAGTCGAGGATCGAATCGGATGGGGGATCAGTTAAGAAGATTACATTTTCGAAACTTGTTAAGGCATTGTTCTTAATAGCATGGTCA GAGATTCTGTTAACAGCTTTTCTGGCCTTGACCTATACCGTGGCAGCTTATGTCGGGCCATATCTCATTGATGCCTTTGTTCAATGCCTGAGTGGGAAAG GGGAGTACAAGAATCAAGGGTATGTGTTAGCTGTTGTGTTTCTAGTTGCGAAAATTGTTGAGCGCATTTCGCAAAGGCAGTGGTTCTTTAAGTTGCAGCA AATCGGTATGAGGATGCGTGCTGCTGTAGTTGCAATGATCTACAACAAGAGTTTGACACTTTCGTGTCTGTCGAAACAAGGGCAAACCAGTGGGGAAATC ATCAATATTATGACGGTTGATGCCGAGAGAATCGCTGACTTCTCTTGGTACATGCATGATGCATGGCTGGTCGTTTTGCAAGTTGGGTTAGCCTTGTTCA TATTGTACAGGAATTTGGGGCTTGCTGCTATAGCAACTTTGGTAGCGACAGTAATCGTAATGTTGCTGAATTTTCCTTTGGGAAGATTGCAAGAAGGGTA TCAGGAGAAGCTGATGAAGTCGAAAGACGCAAGAATGAAAGCGACATCTGAGATTTTGAGGAACATGAGAATATTAAAGTTGCAGGCTTGGGAGATGAAA TTTCTGTCGAAAATCATCGAGCTGAGAAAGACTGAAGCAGGATGGCTGAAAAGATATGTTTACTCATCAGCTTTAATTAATTTCGTCCTCTGGGGCACAC CTACGTTCGTCTCTGTAGCTACTTTCGGTACATGTATGCTTTTGGGGATCCCACTCGAGTCCGGCAAGATCTTATCAGCACTTGCAACTTTCAGGGTTCT TCAAGAGCCAATCTACAATCTCCCTGACACCATTTCCATGTTGGTTCAGATGAAAGTCTCGCTCGACAGGATTGTATCGTTCTTGCGTCTCGATCACTTT ACGAGATATTAA
AA sequence Show only first row Show all	>Lus10030717 pacid=23155210 polypeptide=Lus10030717 locus=Lus10030717.g ID=Lus10030717.BGIv1.0 annot-version=v1.0 MEEEPLLVQEPNKSTKGDSSVTPYSYAGVFGIVSFSWMGPLIALGNNKALDIEDVPQLYKKDSVVGAFSSLKSRIESDGGSVKKITFSKLVKALFLIAWS EILLTAFLALTYTVAAYVGPYLIDAFVQCLSGKGEYKNQGYVLAVVFLVAKIVERISQRQWFFKLQQIGMRMRAAVVAMIYNKSLTLSCLSKQGQTSGEI INIMTVDAERIADFSWYMHDAWLVVLQVGLALFILYRNLGLAAIATLVATVIVMLLNFPLGRLQEGYQEKLMKSKDARMKATSEILRNMRILKLQAWEMK FLSKIIELRKTEAGWLKRYVYSSALINFVLWGTPTFVSVATFGTCMLLGIPLESGKILSALATFRVLQEPIYNLPDTISMLVQMKVSLDRIVSFLRLDHF TRY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13080		EST2, ATMRP3, A...	MULTIDRUG RESISTANCE PROTEIN 3...		Lus10030717 [exp]	0	1
AT1G17930			Aminotransferase-like, plant m...		Lus10004818 [exp]	4.9	0.7287
AT2G15080		AtRLP19	receptor like protein 19 (.1.2...		Lus10039512 [exp]	6.2	0.8165
AT3G47570			Leucine-rich repeat protein ki...		Lus10011388 [exp]	11.3	0.7669
AT3G47570			Leucine-rich repeat protein ki...		Lus10030846 [exp]	11.8	0.7255
AT5G17680			disease resistance protein (TI...		Lus10005588 [exp]	13.4	0.6860
AT4G08850			Leucine-rich repeat receptor-l...		Lus10019035 [exp]	21.4	0.7372
AT5G24320			Transducin/WD40 repeat-like su...		Lus10032436 [exp]	24.1	0.7542
AT5G62310		IRE	INCOMPLETE ROOT HAIR ELONGATIO...		Lus10027196 [exp]	25.6	0.7291
AT5G62310		IRE	INCOMPLETE ROOT HAIR ELONGATIO...		Lus10038912 [exp]	33.6	0.7077
AT4G29230	NAC	ANAC075, NST9	NAC domain containing protein ...		Lus10034999 [exp]	40.2	0.7130

Compare expression of checked genes

Lus10030717 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.