Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13080 1179 / 0 EST2, ATMRP3, ABCC3 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) AT3G13090 1086 / 0 ATMRP8, ATABCC6 ATP-binding cassette C6, multidrug resistance-associated protein 8 (.1) AT3G13100 1068 / 0 ATMRP7, ABCC7 ATP-binding cassette C7, multidrug resistance-associated protein 7 (.1) AT1G04120 875 / 0 ATABCC5, ABCC5, ATMRP5 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2) AT3G60160 775 / 0 ATMRP9, ABCC9 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1) AT3G60970 627 / 0 ATMRP15, ABCC15 ATP-binding cassette C15, multidrug resistance-associated protein 15 (.1) AT2G47800 604 / 0 EST3, ATMRP4, ABCC4 ATP-binding cassette C4, multidrug resistance-associated protein 4 (.1) AT3G62700 602 / 0 ATMRP10, ABCC14 ATP-binding cassette C14, multidrug resistance-associated protein 10 (.1) AT3G59140 602 / 0 ATMRP14, ABCC10 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) AT3G21250 558 / 2e-175 ATMRP6, ABCC8 ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 6, ATP-binding cassette C8, multidrug resistance-associated protein 6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013201 [exp] 1003 / 0 AT3G13080 1498 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Lus10022858 [exp] 868 / 0 AT1G04120 2341 / 0.0 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2) Lus10018027 [exp] 797 / 0 AT3G60160 1863 / 0.0 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1) Lus10042023 [exp] 782 / 0 AT3G60160 1869 / 0.0 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1) Lus10030716 [exp] 751 / 0 AT3G13080 1256 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Lus10024965 [exp] 711 / 0 AT1G04120 2176 / 0.0 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2) Lus10030717 [exp] 707 / 0 AT3G13080 568 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Lus10027567 [exp] 629 / 0 AT3G59140 2001 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Lus10039320 [exp] 628 / 0 AT3G59140 1991 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G362300 [exp] 1362 / 0 AT3G13080 2008 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.001G362200 [exp] 1295 / 0 AT3G13080 1952 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.T125806 [exp] 1229 / 0 AT3G13080 1826 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.003G198401 [exp] 1229 / 0 AT3G13080 1827 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.003G197200 [exp] 1226 / 0 AT3G13080 1832 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.003G197101 [exp] 1224 / 0 AT3G13080 1862 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.T124606 [exp] 1223 / 0 AT3G13080 1830 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.T124506 [exp] 1214 / 0 AT3G13080 1847 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.T124406 [exp] 1206 / 0 AT3G13080 1847 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.003G197100 [exp] 1201 / 0 AT3G13080 1842 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0241 [flax] [poplar] ABC_membrane PF00664 [flax] [poplar] ABC_membrane ABC transporter transmembrane region CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10030718 pacid=23155272 polypeptide=Lus10030718 locus=Lus10030718.g ID=Lus10030718.BGIv1.0 annot-version=v1.0 ATGGAAACTATTGACTCGATCAATCAAGGGGCTTTCACATCTCTTGTTTCCTTTTCTGACATGTTCCTCTGTAAACCCATTTTCTTACGCGGCCTCTCAG GTTCACTGCATCTCGTTTTGTTGCTTTTCTTGTTCATTTGGTTTCTGGGGAAGAAATTCAGGAATGGGGATCACCGAAACGATGGTTCTTCTTCAAGTAA GCACACAAGGTGTTTGTGTTATAACCTGACTGTGCTCTGTTCTCTTGGGTTCTCCTTGTTTAACCTCGCGTTTTGCCTCTTCGGTTATTTGTATTGGTAT AGGAATGGCTGGTTGGATTACCATTATGATGATGACGATAAGTTTGTCACCCTTTTAGATTTAGCTCTCCGGACTTTGTCCTGGGGTGCGCTTACTGTTT TTCTTCACACCCAATTTTCTCCTTCAGCTCAAACAAAGTTCCCATTTTTGTTGAGGGTTTGGTGGGGGTTTTACCTCTCTATCTCTTCTTATTGCCTCGT TGTGGACCTTGTTCTCTACAACAACCAGATTCTGCATTTAGTCTCTGATGCTGTCTCTCTGTTCATTGGCCTGTTCCTATGTTATGTCGGGTTCTTCAGA AACACAAGTGAACCAAAAACACTAATAATGGAAGAAGAGCCTCTTTTGGTTCAAGAGCCCTCCAAAGGGGATGGGAGTGTCACTCCTTATTCAAATGCTG GTGTTTTTGGTCTTTTTTCTTTCTCATGGATGGGTCCTCTGATTGCTCTTGGAAATAACAAAGCTTTAGACCTAGAAGATGTTCCTCAGCTTTATAAAGA AGATAGTGTTGTGGGGGCTTTCACGTCTCTTAAGTCCAGGATCGAAGCAGATGGGGGATCAGTTAAAGAGATTACAGCTTTGAAACTTGTCAAGGCATTG TTCTTGACAGCTTGGAAAGAGATTCTGTTAACAGCTTTTCTGGCATTGGCCTATACTGCATCGTCTTATGTTGGGCCATATCTCATTGATGCATTTGTTC AATGCCTAAGTGGGAAAGGAGAGTACAAGAACCAAGGCTACGTCTTGGCTGCTGTGTTTCTGGTTGGGAAAATTGTTGAGTGCATTTCGCAAAGGCAATG GGTCCTTAAGTTGCAGCAAATCGGGATGAGAATGCGTGCTGCTGTAGTTGCAATGATCTACAACAAGGGCTTGACCCTTTCGTGCCTTTCGAAACAAGGG CAAACTAGTGGGGAGATCATCAATATTATGACAGTGGATGCCGAGCGAATCGCTGACTTCTCTTGGTACATGCACGATCCATGGCTGGTCGTCTTGCAAG TCGGGTTAGCCTTGTTCATATTGTACAGGAACTTGGGGCTTGCTGCTATAGCAACTTTGGTAGCGACCATATGTGTAATGTTGCTGAATTTTCCTTTGGG GAGATTGCAAGAAGGGTATCAGGAGAAGCTGATGAAGTCGAAAGACGCGAGAATGAAAGCGACATCTGAGATTTTGAGGAACATGAGAATTCTAAAGTTG CAGGCTTGGGAGATGAAGTTTTTATCCAAGATCATTGAGCTAAGGAAGACTGAAGCAGGATGGTTGAAAAGATACGTTTACTCTTCAGCTTTGATTAGTT TCGTCTTCTGGGGCGCCCCTACATTCGTCTCTGTAGCTACTTTTGGTACATGTATACTTCTAGGGATCCCACTCGAGTCCGGGAAGATCTTATCAGCACT TGCAACTTTCCGGGTTCTTCAAGAGCCCATTTACAGTCTCCCTGACACAATTTCCATGTTGGTTCAGATGAAAGTTTCGCTTGACAGGATTGTATCGTTC TTACGTCTCGAGGACTTGCCGGATGATGTGGTGAAGAGTATTCCTAGAGAAGCTTCTAATACTGCTATTGAGATAGTTGATGGGGCTTTCTCATGGGATT CTTCTTTACCAAACCCCACTTTACGAGATATTAATCTCAAGGTGTTGTGTGGAATGAAGGTTGCTGTTTGTGGAACTGTCGGTTCGGGGAAATCGAGTTT ACTCTCGTGTATTCTCGGAGAGGTACCAAAGATCTCTGGCACGGTCGAGCTGTGTGGGACAAAGGCTTATGTTGCTCAGTCGCCTTGGATACAGAGTGGC AAGATTCAAGAGAACATTTTATTTGGGCAAGAGATGGATAAAGATAAGTATGATAAGGTACTTGAAGCTTGTGCACTGAAGAAAGACTTGGAGATATTTT CGTTTGGTGATCAAACGGGGATTGGTGAGAGAGGTATCAATTTGAGTGGTGGACAGAAGCAGAGAATTCAGATTGCTCGTGCTCTCTACCAAGATGCTGA TATCTACCTCTTTGATGATCCCTTTAGTGCTGTGGATGCTCATACTGGGTCTCACTTGTTTAAGGAAGTGTTGCTTGGTCATTTGGGTTCCAAAACTGTG GTGTACGTCACTCATCAAGTCGAATTCTTACCTGTAGCAGATATAATTTTGGTGATGAAAGATGGGAGGATAACACAGGCAGGAAAGTACAGTGATATTC TGAATTCAGGATCTGATTTTATGGAACTTGTTGGTGCACACAAGGCAGCTTTGTCAGCTATAGATTCTTCGAAAGCTGCTTCAGAATCTGAGAATGGAAA TATCAATAAGGAAAACAGTGACGACATGATGATTAGTAACGGTATCGAGACAAAAGATGGTAAAGCGGATGATGAGACAAAAGAAGGAGAAGCAAAGGGG CAGCTTGTTCAAGAAGAAGAGAGAGAGAAAGGAAGGGTTGGGTTTACAGTGTACTGGCAGTATCTCATAACAGCATATGGTGGAGCTCTTGCACCCCTTG CAGTGCTCGCGCATGGAATGTTTCAGGTCCTCCAAATCGGGAGCAATTATTGGATGGCTTGGGCAACTCCAGTATCAGAGGATGAAGAGCCTCCTGTTCC TCCAATGACGCTGATAAATGTTTATGTAATTCTAGCTGTTGTTAGCTCTCTATGCATCCTAGCCAGATCCACACTTCTTGCAGCGATATCGTACAAAACT GCTACTTTGCTCTTCAACAAGATGCATTTCTGCATTTTCCGTGCTCCCATGTCGTTTTTCGACTCTACTCCCAGTGGACGAATACTCAATCGTGTCCGAT ATGCCCCTCACTTGCCACTTGTGCTGAGAGGCCTTACCTGCACGTTTGAAGGAGGAAAGAAAACAGGAATTGTGGGGAGAACGGGTAGTGGTAAATCAAC TCTTATTCAGACATTGTTTAGGATTGTGGATCCAACAGCCGGGAAGATTACCATTGATGGCATTGACATCTCATCGATCGGACTCCACGATTTGCGTTCT AGACTCAGCATTATTCCTCAAGATCCTACCATGTTTGAAGGCACTGTAAGAAGCAACCTAGACCCTCTTGAGGAATACTCTGATGAACAGATCTGGGAGG CTCTAGATAAATGCCAACTTGGAGAAGAAGTTAGGAAGAAGGAGAAAAAGTTGGACTCTTCAGTTACTGAGAATGGAGAGAACTGGAGCATGGGGCAGAG ACAGCTAGTATGCCTCGGCCGAGTTCTGCTGAAAAAGAGCAAAGTTTTGGTGCTGGATGAAGCTACTGCGTCAGTAGATACAGCTACAGATAATCTGATC CAGCAAACTCTCAGACAACACTTCTTTGACTGCACAGTTATCACCATTGCGCATAGAATAACGTCTGTTCTTGACAGCGACATGGTTCTTCTGCTAAGTC ACGGGCTTATTGAAGAATATGATACTCCAGCTAGATTGTTGGAGAACAAGTCATCCTCGTTTGCACAACTTGTAGCTGAGTACAGTGAGAGATCCAAAGA ACAGTATTGA
AA sequence Show only first row Show all	>Lus10030718 pacid=23155272 polypeptide=Lus10030718 locus=Lus10030718.g ID=Lus10030718.BGIv1.0 annot-version=v1.0 METIDSINQGAFTSLVSFSDMFLCKPIFLRGLSGSLHLVLLLFLFIWFLGKKFRNGDHRNDGSSSSKHTRCLCYNLTVLCSLGFSLFNLAFCLFGYLYWY RNGWLDYHYDDDDKFVTLLDLALRTLSWGALTVFLHTQFSPSAQTKFPFLLRVWWGFYLSISSYCLVVDLVLYNNQILHLVSDAVSLFIGLFLCYVGFFR NTSEPKTLIMEEEPLLVQEPSKGDGSVTPYSNAGVFGLFSFSWMGPLIALGNNKALDLEDVPQLYKEDSVVGAFTSLKSRIEADGGSVKEITALKLVKAL FLTAWKEILLTAFLALAYTASSYVGPYLIDAFVQCLSGKGEYKNQGYVLAAVFLVGKIVECISQRQWVLKLQQIGMRMRAAVVAMIYNKGLTLSCLSKQG QTSGEIINIMTVDAERIADFSWYMHDPWLVVLQVGLALFILYRNLGLAAIATLVATICVMLLNFPLGRLQEGYQEKLMKSKDARMKATSEILRNMRILKL QAWEMKFLSKIIELRKTEAGWLKRYVYSSALISFVFWGAPTFVSVATFGTCILLGIPLESGKILSALATFRVLQEPIYSLPDTISMLVQMKVSLDRIVSF LRLEDLPDDVVKSIPREASNTAIEIVDGAFSWDSSLPNPTLRDINLKVLCGMKVAVCGTVGSGKSSLLSCILGEVPKISGTVELCGTKAYVAQSPWIQSG KIQENILFGQEMDKDKYDKVLEACALKKDLEIFSFGDQTGIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKEVLLGHLGSKTV VYVTHQVEFLPVADIILVMKDGRITQAGKYSDILNSGSDFMELVGAHKAALSAIDSSKAASESENGNINKENSDDMMISNGIETKDGKADDETKEGEAKG QLVQEEEREKGRVGFTVYWQYLITAYGGALAPLAVLAHGMFQVLQIGSNYWMAWATPVSEDEEPPVPPMTLINVYVILAVVSSLCILARSTLLAAISYKT ATLLFNKMHFCIFRAPMSFFDSTPSGRILNRVRYAPHLPLVLRGLTCTFEGGKKTGIVGRTGSGKSTLIQTLFRIVDPTAGKITIDGIDISSIGLHDLRS RLSIIPQDPTMFEGTVRSNLDPLEEYSDEQIWEALDKCQLGEEVRKKEKKLDSSVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLI QQTLRQHFFDCTVITIAHRITSVLDSDMVLLLSHGLIEEYDTPARLLENKSSSFAQLVAEYSERSKEQY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13080		EST2, ATMRP3, A...	MULTIDRUG RESISTANCE PROTEIN 3...		Lus10030718 [exp]	0	1
AT3G13080		EST2, ATMRP3, A...	MULTIDRUG RESISTANCE PROTEIN 3...		Lus10013201 [exp]	1.0	0.8795
AT1G18670		IBS1	IMPAIRED IN BABA-INDUCED STERI...		Lus10034726 [exp]	3.7	0.7151
AT4G00710		BSK3	BR-signaling kinase 3 (.1)		Lus10018849 [exp]	8.9	0.6828
AT4G16990		RLM3	RESISTANCE TO LEPTOSPHAERIA MA...		Lus10042752 [exp]	8.9	0.7303
AT3G50930		BCS1	cytochrome BC1 synthesis (.1)		Lus10028463 [exp]	11.0	0.7603
AT3G44480		COG1, RPP10, RP...	recognition of peronospora par...		Lus10005813 [exp]	11.7	0.7564
AT5G67220			FMN-linked oxidoreductases sup...		Lus10041598 [exp]	13.4	0.6864
AT3G26470			Powdery mildew resistance prot...		Lus10021768 [exp]	13.5	0.6870
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10027146 [exp]	18.0	0.7048
AT2G23140			RING/U-box superfamily protein...		Lus10011516 [exp]	25.0	0.7158

Compare expression of checked genes

Lus10030718 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.