Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33630 695 / 0 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G47290 192 / 3e-56 AT3BETAHSD/D1 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 1 (.1.2) AT2G26260 183 / 2e-51 AT3BETAHSD/D2 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 (.1.2) AT2G43420 119 / 7e-29 3-beta hydroxysteroid dehydrogenase/isomerase family protein (.1) AT4G33360 52 / 6e-07 FLDH farnesol dehydrogenase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT1G30620 44 / 0.0001 MURUS4, HSR8, UXE1, MUR4 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT4G20460 42 / 0.0007 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G44480 42 / 0.001 DUR DEFECTIVE UGE IN ROOT, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013202 [exp] 923 / 0 AT2G33630 714 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10010311 [exp] 164 / 7e-45 AT2G26260 664 / 0.0 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 (.1.2) Lus10013413 [exp] 162 / 1e-43 AT2G26260 724 / 0.0 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 (.1.2) Lus10000358 [exp] 94 / 7e-22 AT1G47290 298 / 3e-101 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 1 (.1.2) Lus10020776 [exp] 56 / 4e-08 AT1G78570 964 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Lus10004028 [exp] 49 / 5e-06 AT2G45400 290 / 3e-96 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004029 [exp] 42 / 0.0008 AT2G45400 283 / 7e-94 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10023096 [exp] 42 / 0.001 AT5G42800 173 / 1e-50 dihydroflavonol 4-reductase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G005100 [exp] 752 / 0 AT2G33630 738 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G005201 [exp] 298 / 2e-99 AT2G33630 277 / 1e-91 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G218400 [exp] 178 / 1e-49 AT2G26260 816 / 0.0 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 (.1.2) Potri.007G131200 [exp] 120 / 3e-29 AT2G43420 501 / 3e-174 3-beta hydroxysteroid dehydrogenase/isomerase family protein (.1) Potri.002G127500 [exp] 46 / 4e-05 AT4G33360 531 / 0.0 farnesol dehydrogenase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.005G257700 [exp] 45 / 0.0001 AT2G33590 400 / 4e-139 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.011G156100 [exp] 43 / 0.0005 AT1G30620 712 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.002G127400 [exp] 42 / 0.0007 AT4G33360 494 / 4e-177 farnesol dehydrogenase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.009G057600 [exp] 42 / 0.0008 AT5G19440 474 / 7e-170 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01073 [flax] [poplar] 3Beta_HSD 3-beta hydroxysteroid dehydrogenase/isomerase family
Representative CDS sequence Show only first row Show all	>Lus10030720 pacid=23155417 polypeptide=Lus10030720 locus=Lus10030720.g ID=Lus10030720.BGIv1.0 annot-version=v1.0 ATGCATCTGAGCGAGAATGAAGGGATAGAACACAAAGTGTTCGTCGTCACCGGCGGGTTGGGCTTCGTAGGTTCCGCACTCTGTCTCGACCTGGTTCGCA GAGGAGCTCGTCAAGTCCGCGCCTACGATCTCCGTTCAACTTCTCCGTGGTGTCAGTCTCTATCCTCCAGCGGAGTTCAGTGCATCAAAGGTGACGTTAC CAACCAGAAGGATGTAGAGAAGGCCATTCGTGGTGCTGATTGTGTCTTCCATTTAGCGTCCTATGGAATGTCTGGCAAAGAAATGCTGCAGTTCGGCCGA GTTGACGAGGTCAACATCAATGGAACTTGTCATGTTTTGGAAGCTTGCCTTGAGAATGGCGTCAAGAGGCTTGTTTACGTCAGTACATACAATGTTGTGT TTGGAGGGAAGGAGATTGTCAATGGGAATGAGGCTCTGCCTTACTTCCCTCTCGATGATCATGTCGATTCGTATGGACGTACCAAGTCGATTGCTGAGCA GTTAGTACTGAAGTATAGCGGCCGTCCATTTAAGAAGAATAACAGCGGACACCTATATACTTGTGCAGTCCGTCCAGCAGCCATCTATGGACCGGGAGAA GACAGGCATCTTCCGAGGATCGTATCTCTTGCTAAACTGGGTCTGATTCCTTTCAGAATTGGCAATCCAAGTGTGAAATCGGACTGGGTTTATGTGGATA ACCTTGTCATTGCCTTGGTACTTGCAAGCATGGGACTTTTAGATGACATTCCAGGCAGAGAAGGTCGTCCGGTTGCCTCTGGCCAAGCGTACTTTATCTG TGATGGTTCTCCAATCAACAGTTTCGAATTCCTCCAACCTCTTCTCAGAGGTCTAGAATATGATTTACCAAAGGCCTCTCTGCCAGTCCCTCAGGCCCTT GTTCTGGCGAAGGTTTTCGGAGCTGTGTACACAATGTTATATCCATGGTTGAAGCATAAGTGGCTTCCTGAGCCGTTGATCCTTCCTGCTGAAGTATACA AGGTCGGTGTTACGCACTACTTCTCATACCTTAAGGCGAAGCAAGAACTGGGATATGTGCCGATGGTAACACCTAAAGAGGGGATGTCTGCGACAATTTC CTACTGGCAAAAGAAGAAAAGGGAATCGGTGGATGGACCGACAATATACGCATGGCTTTTCGCAGTGGTCGGAATGTTCATAGTCTTGAGTGCTGCAGTT TTGCCGGATGTAGGACCAATTTCCGCGATGAGAGCTCTATGTCTCTTCTTCTTTAGGTCGATGTTGGTGCTTAGAATGGTAGCTTTGTCAGCAACAGCAG CACATGTATTCGAAGGCATATATGCTTGGAAGCTTGCCAAAAAAGTGGATCCTGCAAACGCCAAGGCATGGTTCTGGCAAACCTTTGCTCTCGGTTTCTT TTCGCTACGTTTACTGTTGAAAAGAGCCAAGAATGAATGA
AA sequence Show only first row Show all	>Lus10030720 pacid=23155417 polypeptide=Lus10030720 locus=Lus10030720.g ID=Lus10030720.BGIv1.0 annot-version=v1.0 MHLSENEGIEHKVFVVTGGLGFVGSALCLDLVRRGARQVRAYDLRSTSPWCQSLSSSGVQCIKGDVTNQKDVEKAIRGADCVFHLASYGMSGKEMLQFGR VDEVNINGTCHVLEACLENGVKRLVYVSTYNVVFGGKEIVNGNEALPYFPLDDHVDSYGRTKSIAEQLVLKYSGRPFKKNNSGHLYTCAVRPAAIYGPGE DRHLPRIVSLAKLGLIPFRIGNPSVKSDWVYVDNLVIALVLASMGLLDDIPGREGRPVASGQAYFICDGSPINSFEFLQPLLRGLEYDLPKASLPVPQAL VLAKVFGAVYTMLYPWLKHKWLPEPLILPAEVYKVGVTHYFSYLKAKQELGYVPMVTPKEGMSATISYWQKKKRESVDGPTIYAWLFAVVGMFIVLSAAV LPDVGPISAMRALCLFFFRSMLVLRMVALSATAAHVFEGIYAWKLAKKVDPANAKAWFWQTFALGFFSLRLLLKRAKNE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33630			NAD(P)-binding Rossmann-fold s...		Lus10030720 [exp]	0	1
AT1G69040		ACR4	ACT domain repeat 4 (.1.2)		Lus10003136 [exp]	13.9	0.8969
AT1G13245		RTFL17, DVL4	DEVIL 4, ROTUNDIFOLIA like 17 ...		Lus10041491 [exp]	75.8	0.8619
AT3G48700		ATCXE13	carboxyesterase 13 (.1)		Lus10014036 [exp]	172.6	0.8471
AT5G08130	bHLH	BIM1, bHLH046	basic helix-loop-helix (bHLH) ...		Lus10007974 [exp]	181.0	0.8416
AT5G02100		UNE18, ORP3A	UNFERTILIZED EMBRYO SAC 18, OS...		Lus10024386 [exp]	222.0	0.8376
AT3G01980			NAD(P)-binding Rossmann-fold s...		Lus10041545 [exp]	232.1	0.8324
AT2G38840			Guanylate-binding family prote...		Lus10003084 [exp]	236.8	0.8261

Compare expression of checked genes

Lus10030720 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.