Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20870 69 / 4e-14 HSP20-like chaperones superfamily protein (.1) AT1G76440 61 / 5e-12 HSP20-like chaperones superfamily protein (.1.2.3) AT1G54840 59 / 1e-10 HSP20-like chaperones superfamily protein (.1.2) AT5G52450 47 / 1e-06 MATE efflux family protein (.1) AT1G73700 47 / 2e-06 MATE efflux family protein (.1) AT2G34360 47 / 2e-06 MATE efflux family protein (.1) AT1G71140 40 / 0.0003 MATE efflux family protein (.1) AT1G15150 40 / 0.0004 MATE efflux family protein (.1) AT1G15160 40 / 0.0006 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011624 [exp] 144 / 2e-44 AT5G52450 49 / 2e-07 MATE efflux family protein (.1) Lus10013203 [exp] 124 / 2e-37 AT1G20870 60 / 3e-12 HSP20-like chaperones superfamily protein (.1) Lus10017380 [exp] 109 / 9e-31 ND / Lus10009214 [exp] 82 / 5e-21 AT1G49480 40 / 6e-05 related to vernalization1 1 (.1) Lus10009688 [exp] 81 / 2e-18 AT3G18990 113 / 2e-28 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10036045 [exp] 71 / 1e-14 AT3G18990 110 / 2e-27 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10017998 [exp] 58 / 3e-10 AT5G52450 556 / 0.0 MATE efflux family protein (.1) Lus10041994 [exp] 57 / 1e-09 AT5G52450 608 / 0.0 MATE efflux family protein (.1) Lus10035725 [exp] 46 / 6e-06 AT1G54850 132 / 1e-36 HSP20-like chaperones superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G243100 [exp] 79 / 6e-19 AT1G76440 153 / 9e-49 HSP20-like chaperones superfamily protein (.1.2.3) Potri.013G024750 [exp] 59 / 1e-10 AT1G54850 187 / 1e-57 HSP20-like chaperones superfamily protein (.1) Potri.013G024900 [exp] 56 / 1e-09 AT1G54850 175 / 6e-52 HSP20-like chaperones superfamily protein (.1) Potri.002G005400 [exp] 55 / 4e-09 AT1G20870 179 / 1e-51 HSP20-like chaperones superfamily protein (.1) Potri.012G051900 [exp] 55 / 5e-09 AT5G52450 644 / 0.0 MATE efflux family protein (.1) Potri.013G024600 [exp] 52 / 3e-08 AT1G54850 216 / 2e-71 HSP20-like chaperones superfamily protein (.1) Potri.010G116700 [exp] 52 / 5e-08 AT5G52450 558 / 0.0 MATE efflux family protein (.1) Potri.006G171240 [exp] 52 / 5e-08 AT5G52450 486 / 3e-169 MATE efflux family protein (.1) Potri.006G170900 [exp] 52 / 5e-08 AT5G52450 486 / 2e-169 MATE efflux family protein (.1) Potri.010G116900 [exp] 44 / 2e-05 AT1G15170 598 / 0.0 MATE efflux family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030721 pacid=23155340 polypeptide=Lus10030721 locus=Lus10030721.g ID=Lus10030721.BGIv1.0 annot-version=v1.0 ATGTTCGTGGGGCATCTGGGTGAACTAAGCTTGTCCTCTGCTTCCATGGCTACTTCTTTCGCTACTGTCACTGGCTTCAGCTTACTGCATATACCTCTAT GGTTTACGAGTCAGCAGAGAGCTTTCCAAGGTGAGAAACATGTGGAGCTGGAGGTTGGGGACAAGGCTTGGACAGTGAATCTCCAATGCAGAAGAGCTCA AACTAAAAAACGATCAATCATTTCCCCACTTGTTTTGGCAGGGGATTTGAAGTGTAGAATCCAGCTAGATGGATCGGTGCAGATACGAGGGATACGAATG CCTTGCTCAGATTTTTTGAGTAGCTTCCCTGGAGAATTCCAGCTGAGGGTTCAGGATCTCAGCCCCAGTGGGGCATTTCGGATTTGCTTCAAGCTGCCTG GACCTGTAGAACCACGACTCTTTGCTCCTAGCTATCGTGATGGAATACTCAAAGGGGTTGTGATGAAATGTCGAATGCCAAGTGCAGCACCACCTGCTCC CCAACAAACCGCATGA
AA sequence Show only first row Show all	>Lus10030721 pacid=23155340 polypeptide=Lus10030721 locus=Lus10030721.g ID=Lus10030721.BGIv1.0 annot-version=v1.0 MFVGHLGELSLSSASMATSFATVTGFSLLHIPLWFTSQQRAFQGEKHVELEVGDKAWTVNLQCRRAQTKKRSIISPLVLAGDLKCRIQLDGSVQIRGIRM PCSDFLSSFPGEFQLRVQDLSPSGAFRICFKLPGPVEPRLFAPSYRDGILKGVVMKCRMPSAAPPAPQQTA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20870			HSP20-like chaperones superfam...		Lus10030721 [exp]	0	1
AT5G56040			Leucine-rich receptor-like pro...		Lus10042090 [exp]	4.2	0.8129
AT3G15352		ATCOX17	ARABIDOPSIS THALIANA CYTOCHROM...		Lus10018872 [exp]	25.1	0.7699
AT3G11330		PIRL9	plant intracellular ras group-...		Lus10013689 [exp]	56.3	0.7899
AT1G63270		ABCI1, ATNAP10	ATP-binding cassette I1, non-i...		Lus10022692 [exp]	62.5	0.7852
AT5G66060			2-oxoglutarate (2OG) and Fe(II...		Lus10041857 [exp]	84.7	0.7807
					Lus10012125 [exp]	92.6	0.7421
AT5G62220		ATGT18	glycosyltransferase 18 (.1)		Lus10027386 [exp]	109.6	0.7595
AT5G51700		ATRAR1, RPR2, P...	Required for Mla12 resistance ...		Lus10031688 [exp]	110.1	0.7575
AT2G25760			Protein kinase family protein ...		Lus10005479 [exp]	120.2	0.7517
					Lus10012740 [exp]	142.0	0.7255

Compare expression of checked genes

Lus10030721 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.