Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20850 511 / 0 XCP2 xylem cysteine peptidase 2 (.1) AT4G35350 511 / 0 XCP1 xylem cysteine peptidase 1 (.1.2) AT5G43060 363 / 2e-123 Granulin repeat cysteine protease family protein (.1) AT1G47128 362 / 5e-123 RD21A, RD21 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) AT5G50260 345 / 9e-118 CEP1 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) AT3G19390 347 / 2e-117 Granulin repeat cysteine protease family protein (.1) AT3G48340 331 / 2e-112 CEP2 cysteine endopeptidase 2, Cysteine proteinases superfamily protein (.1) AT1G09850 332 / 2e-111 XBCP3 xylem bark cysteine peptidase 3 (.1) AT4G11310 328 / 4e-111 RD21A, RD21 Papain family cysteine protease (.1) AT1G06260 326 / 1e-110 Cysteine proteinases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013204 [exp] 704 / 0 AT1G20850 509 / 0.0 xylem cysteine peptidase 2 (.1) Lus10033040 [exp] 358 / 6e-123 AT5G50260 555 / 0.0 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) Lus10024801 [exp] 361 / 2e-122 AT1G47128 633 / 0.0 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) Lus10013674 [exp] 355 / 8e-122 AT5G50260 554 / 0.0 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) Lus10042078 [exp] 352 / 4e-120 AT5G50260 538 / 0.0 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) Lus10018083 [exp] 351 / 5e-120 AT5G50260 533 / 0.0 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) Lus10006542 [exp] 349 / 1e-119 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1) Lus10020730 [exp] 349 / 2e-119 AT5G45890 392 / 1e-136 senescence-associated gene 12 (.1) Lus10002827 [exp] 352 / 1e-118 AT1G47128 609 / 0.0 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G256000 [exp] 545 / 0 AT1G20850 539 / 0.0 xylem cysteine peptidase 2 (.1) Potri.002G005700 [exp] 530 / 0 AT1G20850 531 / 0.0 xylem cysteine peptidase 2 (.1) Potri.004G207600 [exp] 515 / 0 AT4G35350 543 / 0.0 xylem cysteine peptidase 1 (.1.2) Potri.014G024100 [exp] 366 / 1e-124 AT5G43060 646 / 0.0 Granulin repeat cysteine protease family protein (.1) Potri.012G090900 [exp] 361 / 4e-124 AT5G50260 561 / 0.0 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) Potri.007G047600 [exp] 356 / 6e-122 AT5G43060 461 / 9e-162 Granulin repeat cysteine protease family protein (.1) Potri.001G302100 [exp] 355 / 5e-120 AT1G47128 598 / 0.0 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) Potri.009G098100 [exp] 354 / 1e-119 AT1G47128 607 / 0.0 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) Potri.015G087400 [exp] 350 / 1e-119 AT5G50260 550 / 0.0 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) Potri.004G056316 [exp] 343 / 2e-117 AT5G45890 419 / 3e-147 senescence-associated gene 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00112 [flax] [poplar] Peptidase_C1 Papain family cysteine protease CL0125 [flax] [poplar] PF08246 [flax] [poplar] Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29)
Representative CDS sequence Show only first row Show all	>Lus10030722 pacid=23155292 polypeptide=Lus10030722 locus=Lus10030722.g ID=Lus10030722.BGIv1.0 annot-version=v1.0 ATGGCCTCCAACAACACACTCTTCCTCCTCCTAGCTATGGCCACCGTTTCAGCATTCGTCGTTGGTGTCTCTGCTCGCGACTTCTCCATAGTGGGCTACT CCTCTGACGACTTGACATCCACCGATAAGCTGGTGGACCTGTTCGAGTCGTGGATGGACAAGCACAGCAAAATGTACGACACCATTGAGGAGAAGCTCAA AAGGTTCGACATCTTCAAGGACAACCTCTTCCACATCGACGAGACCAACAAGAAGGTCACCAACTACTGGCTAGGACTTAACGAGTTCGCTGACTTGAGC CACCACGAGTTCAAGAGCATGTACCTTGGCCTCAAACCTCCCACCACTTCGGCAAGAAGGGAGTCAAATGTCGAGGAGTATGAGGCGGTTGAGAGTAATG TTCCGAAGGCGGTGGACTGGAGGAAGAAGGGGGCTGTGACTCCGGTCAAGAACCAAGGCTCGTGCGGAAGTTGTTGGGCATTCTCCACAGTTGCAGCAGT CGAAGGAATCAACCAGATCGTTACGGGGAACCTGACTTCCCTTTCGGAGCAGGAGCTTATTGATTGTGACAAGGGTACTTACAACAATGGTTGCAATGGT GGTCTCATGGACTATGCTTTTGCTTACATTGCTTCCAATGGTGGTCTCCACAAGGAGGAGGATTACCCTTACATCATGGAAGAGGGCACCTGCGAGATGA CCAAAGATGTGGACTCGGAAGTGGTAACGATTAGCGGGTACAAGGATGTGCCAGCGAACAACGAGCAGAGTCTGATCAAGGCGTTGGCTAAGCAGCCATT GAGCGTTGCCATTGATGCATCCGGAAGGGAGTTCCAATTCTACAGTGGGGGAGTGTTCGACGGGAAGTGCGGGACAAGTCTGGACCACGGCGTGGCAGCG GTTGGGTACGGGTCGAGCGGGAAAGGGAACGACTTCATCGTTGTGAAGAACTCGTGGGGGACCAAATGGGGAGAACAGGGCTACATCAGGATGAAGAGGA ACACCGGCAAAGCTGAAGGTCTCTGTGGCATCAACAAGATGGCTTCCTATCCTACTAAATCCAAATGA
AA sequence Show only first row Show all	>Lus10030722 pacid=23155292 polypeptide=Lus10030722 locus=Lus10030722.g ID=Lus10030722.BGIv1.0 annot-version=v1.0 MASNNTLFLLLAMATVSAFVVGVSARDFSIVGYSSDDLTSTDKLVDLFESWMDKHSKMYDTIEEKLKRFDIFKDNLFHIDETNKKVTNYWLGLNEFADLS HHEFKSMYLGLKPPTTSARRESNVEEYEAVESNVPKAVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVTGNLTSLSEQELIDCDKGTYNNGCNG GLMDYAFAYIASNGGLHKEEDYPYIMEEGTCEMTKDVDSEVVTISGYKDVPANNEQSLIKALAKQPLSVAIDASGREFQFYSGGVFDGKCGTSLDHGVAA VGYGSSGKGNDFIVVKNSWGTKWGEQGYIRMKRNTGKAEGLCGINKMASYPTKSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35350		XCP1	xylem cysteine peptidase 1 (.1...		Lus10030722 [exp]	0	1
AT5G48920		TED7	tracheary element differentiat...		Lus10028626 [exp]	1.0	0.9924
AT5G61750			RmlC-like cupins superfamily p...		Lus10042616 [exp]	1.4	0.9923
AT1G55180		PLDALPHA4, PLDE...	phospholipase D alpha 4 (.1)		Lus10036361 [exp]	2.8	0.9922
AT3G45010		SCPL48	serine carboxypeptidase-like 4...		Lus10041339 [exp]	3.0	0.9923
AT3G62160			HXXXD-type acyl-transferase fa...		Lus10004527 [exp]	3.9	0.9919
AT4G18425			Protein of unknown function (D...		Lus10013969 [exp]	4.2	0.9908
AT2G42005			Transmembrane amino acid trans...		Lus10026549 [exp]	4.4	0.9774
AT5G22980		SCPL47	serine carboxypeptidase-like 4...		Lus10000147 [exp]	5.9	0.9906
AT3G10410		CPY, SCPL49	CARBOXYPEPTIDASE Y, SERINE CAR...		Lus10037381 [exp]	6.0	0.9883
AT4G25850		ORP4B	OSBP(oxysterol binding protein...		Lus10006969 [exp]	6.2	0.9829

Compare expression of checked genes

Lus10030722 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.