Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76420 229 / 4e-72 NAC NAC368, CUC3, ANAC031 CUP SHAPED COTYLEDON3, Arabidopsis NAC domain containing protein 31, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT5G53950 219 / 9e-68 NAC ATCUC2, CUC2, ANAC098 CUP-SHAPED COTYLEDON 2, Arabidopsis NAC domain containing protein 98, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT3G15170 215 / 5e-67 NAC ATNAC1, CUC1, ANAC054 CUP-SHAPED COTYLEDON1, Arabidopsis NAC domain containing protein 54, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT2G24430 209 / 1e-64 NAC ANAC039, ANAC038 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) AT3G18400 204 / 6e-63 NAC ANAC058 NAC domain containing protein 58 (.1) AT5G61430 204 / 2e-62 NAC ANAC100, ATNAC5 NAC domain containing protein 100 (.1) AT5G18270 203 / 3e-62 NAC ANAC087 Arabidopsis NAC domain containing protein 87 (.1.2) AT5G07680 202 / 3e-62 NAC ANAC079, ATNAC4, ANAC080 Arabidopsis NAC domain containing protein 79, NAC domain containing protein 80 (.1.2) AT3G29035 202 / 4e-62 NAC ORS1, AtNAC3, ANAC059 ORE1 SISTER1, Arabidopsis NAC domain containing protein 59, NAC domain containing protein 3 (.1) AT5G39610 201 / 7e-62 NAC ORE1, AtNAC2, ANAC092, ATNAC6 ORESARA 1, NAC domain containing protein 2, Arabidopsis NAC domain containing protein 92, NAC domain containing protein 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013205 [exp] 597 / 0 AT1G76420 270 / 4e-88 CUP SHAPED COTYLEDON3, Arabidopsis NAC domain containing protein 31, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10041924 [exp] 221 / 8e-71 AT5G53950 281 / 9e-95 CUP-SHAPED COTYLEDON 2, Arabidopsis NAC domain containing protein 98, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10005537 [exp] 224 / 2e-70 AT5G53950 317 / 3e-107 CUP-SHAPED COTYLEDON 2, Arabidopsis NAC domain containing protein 98, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10020165 [exp] 205 / 4e-62 AT2G24430 306 / 2e-102 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Lus10021659 [exp] 203 / 6e-62 AT5G61430 361 / 8e-125 NAC domain containing protein 100 (.1) Lus10001648 [exp] 202 / 8e-62 AT5G61430 359 / 4e-124 NAC domain containing protein 100 (.1) Lus10026966 [exp] 202 / 3e-61 AT2G24430 311 / 6e-105 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Lus10009029 [exp] 201 / 3e-61 AT3G18400 311 / 3e-105 NAC domain containing protein 58 (.1) Lus10009669 [exp] 199 / 2e-60 AT3G18400 308 / 3e-104 NAC domain containing protein 58 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G005800 [exp] 283 / 2e-92 AT1G76420 326 / 7e-110 CUP SHAPED COTYLEDON3, Arabidopsis NAC domain containing protein 31, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.005G255900 [exp] 274 / 4e-89 AT1G76420 295 / 4e-98 CUP SHAPED COTYLEDON3, Arabidopsis NAC domain containing protein 31, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.011G115400 [exp] 218 / 7e-68 AT5G53950 312 / 1e-104 CUP-SHAPED COTYLEDON 2, Arabidopsis NAC domain containing protein 98, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.001G396300 [exp] 211 / 2e-65 AT5G53950 299 / 5e-100 CUP-SHAPED COTYLEDON 2, Arabidopsis NAC domain containing protein 98, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.019G031600 [exp] 212 / 6e-65 AT5G18270 328 / 6e-111 Arabidopsis NAC domain containing protein 87 (.1.2) Potri.017G086200 [exp] 209 / 2e-64 AT5G61430 386 / 2e-134 NAC domain containing protein 100 (.1) Potri.006G277000 [exp] 208 / 5e-64 AT2G24430 340 / 1e-116 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Potri.015G046800 [exp] 207 / 8e-64 AT3G18400 326 / 1e-111 NAC domain containing protein 58 (.1) Potri.018G003800 [exp] 207 / 1e-63 AT2G24430 350 / 1e-120 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Potri.012G056300 [exp] 205 / 2e-63 AT3G18400 317 / 6e-108 NAC domain containing protein 58 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10030723 pacid=23155269 polypeptide=Lus10030723 locus=Lus10030723.g ID=Lus10030723.BGIv1.0 annot-version=v1.0 ATGGAGGAAATGCGGCAGCTATGTGAAGCAGCGGCGGCGGGAGAAGCAGTAGAAGAGGTCAACGAGCATGGTCTCCCACCCGGCTTCAGGTTCCACCCTA CCGACGAAGAGCTCATCACTTTCTACCTCGCTTCCAAGGTCTTCCATGGCTCCTTCTGCGGCGTCCAAATCGCCGAAATCGACCTCAACCGCTGCGAGCC CTGGGACCTCCCTGACGCGGCGAAGATGGGGGAGAAAGAATGGTACTTCTTCAGCTTGAGGGACAGGAAGTACCCAACTGGCCTCAGAACCAACAGGGCC ACCGGAGCCGGCTACTGGAAGGCCACCGGCAAGGACAGAGAAGTCTACAGCAGCAGTACCGCTGCCGCCGCCGCCGCCGCCGGCGGAGGAGGGATGACGT GGCATAATAATAACAATAAGATGCTGTTGGGGATGAAGAAAACCCTAGTGTTCTATAAAGGAAGGGCGCCAAGAGGTGAAAAGACCAAATGGGTCATGCA CGAGTACCGCCTCGACGGTCACTTATCCTACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCGCTCACCCCCCCCGCCGCCCCCCCCTCTCCTT CCTCCTCCGCTAAGGATATTTCACAAGGCTGTGGAGAAGAAGAATGGAGGAATGTTATTCCAGCTCCAAGGGCTTCAGGAGCTAGCAGCTCTGCACGATT ACCCTCCGAATTCTCCACCACCGGCGGGTTGCTTGCCACCTTTACTCGAAGCTGCCGCTTGTTCCTCCTCGCCGTGGGAATTATTATGTCATCATCGCCC TAACAACCCTCCTAGTTTCCTCACACACAACAACGATGACGTGGCTGCTGAACAGGACGAAGACGACCTTAAAACTATATTGGGCCAGGCAGTCAGTGTG AAGAAGAACAACAACTGCCACGTCATGATTGCTCCAACTGATGTTCTCAAACATTGCAAGAAGGAGGATGCCAATGATCAGCAAGTCCCTGGACTCAGCT GGCAAAACTATCCCAACCCTTTGACGTCGTGCATTAATGTCGATGGTCACGAATCGGAGGGTTTCCATATGATGTTGGATCACGCTCCTACTAGTACTAC TACTAGTCGGTCTTGTTTTGGTCTCGGAGGAGATACTTGGTCGTCGCTAATGGGTAACGCCTGGCCTGGCCACCCGCTTAATTAG
AA sequence Show only first row Show all	>Lus10030723 pacid=23155269 polypeptide=Lus10030723 locus=Lus10030723.g ID=Lus10030723.BGIv1.0 annot-version=v1.0 MEEMRQLCEAAAAGEAVEEVNEHGLPPGFRFHPTDEELITFYLASKVFHGSFCGVQIAEIDLNRCEPWDLPDAAKMGEKEWYFFSLRDRKYPTGLRTNRA TGAGYWKATGKDREVYSSSTAAAAAAAGGGGMTWHNNNNKMLLGMKKTLVFYKGRAPRGEKTKWVMHEYRLDGHLSYXXXXXXXXXXXPRSPPPPPPPLL PPPLRIFHKAVEKKNGGMLFQLQGLQELAALHDYPPNSPPPAGCLPPLLEAAACSSSPWELLCHHRPNNPPSFLTHNNDDVAAEQDEDDLKTILGQAVSV KKNNNCHVMIAPTDVLKHCKKEDANDQQVPGLSWQNYPNPLTSCINVDGHESEGFHMMLDHAPTSTTTSRSCFGLGGDTWSSLMGNAWPGHPLN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76420	NAC	NAC368, CUC3, A...	CUP SHAPED COTYLEDON3, Arabido...		Lus10030723 [exp]	0	1
AT1G27950		LTPG1	glycosylphosphatidylinositol-a...		Lus10015779 [exp]	1.0	0.9769
AT3G05600			alpha/beta-Hydrolases superfam...		Lus10020663 [exp]	1.4	0.9660
					Lus10011220 [exp]	2.4	0.9621
					Lus10018463 [exp]	3.2	0.9490
AT5G45650			subtilase family protein (.1)		Lus10007083 [exp]	4.7	0.9489
AT1G15910		FDM1	factor of DNA methylation 1, X...		Lus10026076 [exp]	7.2	0.9601
AT3G45980		H2B, HTB9	HISTONE H2B, Histone superfami...		Lus10013544 [exp]	10.6	0.9442
AT3G22810			Plant protein of unknown funct...		Lus10014703 [exp]	11.0	0.9444
AT1G08970	CCAAT	NF-YC9, HAP5C	"nuclear factor Y, subunit C9"...		Lus10041221 [exp]	12.0	0.9463
AT1G26680	B3	REM17	transcriptional factor B3 fami...		Lus10026921 [exp]	13.1	0.9067

Compare expression of checked genes

Lus10030723 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.