Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24830 194 / 7e-61 arginosuccinate synthase family (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013207 [exp] 216 / 1e-69 AT4G24830 724 / 0.0 arginosuccinate synthase family (.1.2) Lus10012800 [exp] 209 / 1e-66 AT4G24830 777 / 0.0 arginosuccinate synthase family (.1.2) Lus10033978 [exp] 204 / 1e-64 AT4G24830 767 / 0.0 arginosuccinate synthase family (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G020200 [exp] 204 / 2e-64 AT4G24830 761 / 0.0 arginosuccinate synthase family (.1.2) Potri.010G239000 [exp] 203 / 3e-64 AT4G24830 754 / 0.0 arginosuccinate synthase family (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF00764 [flax] [poplar] Arginosuc_synth Arginosuccinate synthase
Representative CDS sequence Show only first row Show all	>Lus10030725 pacid=23155380 polypeptide=Lus10030725 locus=Lus10030725.g ID=Lus10030725.BGIv1.0 annot-version=v1.0 ATGAACCAGTTGAAGGCGCAATCCGCCAGCCTCACCTCCGACGGAGGACTCCGGCGAGGGAGAATTATGGCTGTGAGGTTGTCTGCTTTACTGCTGATGT TGGTCAAGGAGACGATCCAAGTGAAAGACTCGCTAGCGTTGAAGTACGCGGAGCTGGTTTATGCCGGTAGGTGGTTTGATCCACTTCGCGAATCGATGGA CGCATTCATGGAGAAGATCACGGAAACAACTACCGGTTGTGTGACTCTGAAGCTTTACAAGGGATCCGTTTCAGTAGCGGGGAGAACGAGTCCGAATAGT CTGTACAGGGAAGACATTGCGTCGTTTGAGAACGGGGAGATATATGATCAAGCTGATGCTGCTGGGTTTATTAGGTTGTACGGTCTTCCCATGAGAGTTA GGGCAATGCTTGAAAAGGGTATCTGA
AA sequence Show only first row Show all	>Lus10030725 pacid=23155380 polypeptide=Lus10030725 locus=Lus10030725.g ID=Lus10030725.BGIv1.0 annot-version=v1.0 MNQLKAQSASLTSDGGLRRGRIMAVRLSALLLMLVKETIQVKDSLALKYAELVYAGRWFDPLRESMDAFMEKITETTTGCVTLKLYKGSVSVAGRTSPNS LYREDIASFENGEIYDQADAAGFIRLYGLPMRVRAMLEKGI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24830			arginosuccinate synthase famil...		Lus10030725 [exp]	0	1
AT1G80480		PTAC17	plastid transcriptionally acti...		Lus10018172 [exp]	3.2	0.8620
AT1G14810			semialdehyde dehydrogenase fam...		Lus10013239 [exp]	9.5	0.7981
AT3G51010			unknown protein		Lus10042347 [exp]	10.8	0.8645
AT5G43790			Pentatricopeptide repeat (PPR)...		Lus10039388 [exp]	15.6	0.8567
AT1G63270		ABCI1, ATNAP10	ATP-binding cassette I1, non-i...		Lus10022692 [exp]	17.3	0.8377
AT5G66500			Tetratricopeptide repeat (TPR)...		Lus10041770 [exp]	17.7	0.8256
AT4G10760		MTA, EMB1706	EMBRYO DEFECTIVE 1706, mRNAade...		Lus10010408 [exp]	18.8	0.8398
AT2G28190		CZSOD2, CSD2	copper/zinc superoxide dismuta...		Lus10016155 [exp]	18.9	0.8230
AT1G05670			Pentatricopeptide repeat (PPR-...		Lus10026465 [exp]	19.9	0.8264
AT2G03880		REME1	required for efficiency of mit...		Lus10001617 [exp]	20.2	0.8478

Compare expression of checked genes

Lus10030725 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.