Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20830 240 / 1e-76 MCD1 multiple chloroplast division site 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013209 [exp] 585 / 0 AT1G20830 294 / 1e-97 multiple chloroplast division site 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G255300 [exp] 299 / 4e-99 AT1G20830 330 / 1e-111 multiple chloroplast division site 1 (.1) Potri.002G006300 [exp] 271 / 2e-88 AT1G20830 331 / 7e-112 multiple chloroplast division site 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030727 pacid=23155300 polypeptide=Lus10030727 locus=Lus10030727.g ID=Lus10030727.BGIv1.0 annot-version=v1.0 ATGGCGACTCTGCATTTCCCCTCATCTTCATTTCAGACCTCTCCGCGCCTCCCTAATCACTGCCTTCATCCAAACACAGCGCAGCTCAGGAGTGACTTCC TTATACTATTCCATCGTCCATTGAGTTGCAATCCTCCGAAATCTATGTCCCGGCTGAGATTTCACTCGCTTAAAGCCGTTGCTAGAGATCCCGTTAACCC AGCAGACGGAGGATTCGAAGCAGCAGCAGCTAGCGACGGCGTTAGCCCGGCAGACGGAGAATTTGAAGCAGCAGCTAGCGATCCCGTTATCCCGGCAGAC GGAGGATCAGCTGATTCTCCAGGTGAGATAGTTAAGAGCGATGCCACTAACAGCTCCCCATATACCAACCGCTTTATCCCAAAATTTCAAGCAGCAGTGT CCCAACTTACTCCTTTCGTTTCTTCGATGAGAACACACGCCGGAGGTAACTATGTAATCTGGGTATGCACTGGAACTGCATTCTTGTTCATTGCCATGAG AGTTATCATTCGCGTTACTCGAAAACCAAAGCTTAGGCGTCCAGGGTCAGTGGCTGATCTTGTTCGACGCGGCCAGCTGAGATCTGATCGAAGAGGCATC CCGAGATCTCCCGAATATGATGACCCATTCAACAACCCGTTCGTGAAAGCTGGCAAGAGTGACTCAACTGTGGAAGTGTGTGGCAAGGTTTATAAGTTAG CCCCCGTTACACTCACGAAGGAAGAACAGGCTACTCATCAGAGGAGGAGGTCGAGGGCATATCAATGGAAGAGGCCGACAATGTTCCTTAAGGAAGGCGA TTCAGTACCCGATGATGTCGATCCTGAATCAGTCAGATGGATCCCTGCAAATCATCCTTTTGCGACTACCACCAGTGAAATCGATGAAAACTTGGCTCAA AATAATGTCCACCAAAAGCATGGTGTTCCGTACCGAATACAGGCCGAGCATGAGGCGCTACAACAGAAACTAGAAGCATTACAACAGGGGCAAAAGCTGA ATAAGTTTTTCGTCGACAATGGAAATGCGAAAGGGAACGAAAGATCGTCGAGGTTGCATCCCAAGTCAAGCGAAACCGTGGAGCAGAATTCTTCAAATTC CATGAACAGCATTTCATCCTCCGATGATCCTCAGAAACCATAA
AA sequence Show only first row Show all	>Lus10030727 pacid=23155300 polypeptide=Lus10030727 locus=Lus10030727.g ID=Lus10030727.BGIv1.0 annot-version=v1.0 MATLHFPSSSFQTSPRLPNHCLHPNTAQLRSDFLILFHRPLSCNPPKSMSRLRFHSLKAVARDPVNPADGGFEAAAASDGVSPADGEFEAAASDPVIPAD GGSADSPGEIVKSDATNSSPYTNRFIPKFQAAVSQLTPFVSSMRTHAGGNYVIWVCTGTAFLFIAMRVIIRVTRKPKLRRPGSVADLVRRGQLRSDRRGI PRSPEYDDPFNNPFVKAGKSDSTVEVCGKVYKLAPVTLTKEEQATHQRRRSRAYQWKRPTMFLKEGDSVPDDVDPESVRWIPANHPFATTTSEIDENLAQ NNVHQKHGVPYRIQAEHEALQQKLEALQQGQKLNKFFVDNGNAKGNERSSRLHPKSSETVEQNSSNSMNSISSSDDPQKP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20830		MCD1	multiple chloroplast division ...		Lus10030727 [exp]	0	1
AT1G28760			Uncharacterized conserved prot...		Lus10034420 [exp]	2.0	0.8231
AT1G02880		TPK1	thiamin pyrophosphokinase1 (.1...		Lus10010283 [exp]	2.8	0.8299
AT3G45900			Ribonuclease P protein subunit...		Lus10034732 [exp]	3.7	0.8448
AT1G20830		MCD1	multiple chloroplast division ...		Lus10013209 [exp]	3.9	0.8249
AT3G49430		SRP34A, SR34a, ...	Serine/Arginine-Rich Protein S...		Lus10032940 [exp]	3.9	0.7827
AT5G48720		XRI1, XRI	x-ray induced transcript 1 (.1...		Lus10038181 [exp]	5.5	0.8187
AT1G29350			Kinase-related protein of unkn...		Lus10000188 [exp]	6.0	0.7936
AT1G71080			RNA polymerase II transcriptio...		Lus10004071 [exp]	6.1	0.7485
AT4G22320			unknown protein		Lus10032566 [exp]	8.1	0.8227
AT2G26970			Polynucleotidyl transferase, r...		Lus10041292 [exp]	12.8	0.7890

Compare expression of checked genes

Lus10030727 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.