Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24360 669 / 0 AtIRE1b, ATIRE1-1 ARABIDOPSIS THALIANA INOSITOL REQUIRING 1-1, inositol requiring 1-1 (.1.2.3) AT2G17520 572 / 0 ATIRE1-2, IRE1A ARABIDOPSIS THALIANA INOSITOL REQUIRING 1-2, Endoribonuclease/protein kinase IRE1-like (.1) AT3G11870 292 / 2e-88 Endoribonuclease/protein kinase IRE1-like (.1) AT1G09000 84 / 2e-16 MAPKKK1, ANP1 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) AT5G66850 84 / 3e-16 MAPKKK5 mitogen-activated protein kinase kinase kinase 5 (.1) AT1G54960 82 / 8e-16 MAPKKK2, ANP2 MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASES 2, NPK1-related protein kinase 2 (.1) AT3G22750 81 / 9e-16 Protein kinase superfamily protein (.1) AT2G05060 79 / 2e-15 Protein kinase superfamily protein (.1) AT3G06030 79 / 6e-15 AtANP3, MAPKKK12, ANP3 NPK1-related protein kinase 3 (.1) AT3G63260 77 / 1e-14 ATMRK1 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013212 [exp] 1610 / 0 AT5G24360 701 / 0.0 ARABIDOPSIS THALIANA INOSITOL REQUIRING 1-1, inositol requiring 1-1 (.1.2.3) Lus10035979 [exp] 682 / 0 AT2G17520 618 / 0.0 ARABIDOPSIS THALIANA INOSITOL REQUIRING 1-2, Endoribonuclease/protein kinase IRE1-like (.1) Lus10009339 [exp] 82 / 8e-16 AT5G66850 568 / 0.0 mitogen-activated protein kinase kinase kinase 5 (.1) Lus10019635 [exp] 82 / 1e-15 AT5G66850 561 / 0.0 mitogen-activated protein kinase kinase kinase 5 (.1) Lus10016768 [exp] 81 / 2e-15 AT5G66850 460 / 3e-155 mitogen-activated protein kinase kinase kinase 5 (.1) Lus10010519 [exp] 80 / 6e-15 AT3G06030 726 / 0.0 NPK1-related protein kinase 3 (.1) Lus10034060 [exp] 79 / 6e-15 AT3G06030 730 / 0.0 NPK1-related protein kinase 3 (.1) Lus10022461 [exp] 79 / 1e-14 AT5G66810 756 / 0.0 unknown protein Lus10020374 [exp] 76 / 4e-14 AT4G31170 697 / 0.0 Protein kinase superfamily protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G254000 [exp] 1120 / 0 AT5G24360 722 / 0.0 ARABIDOPSIS THALIANA INOSITOL REQUIRING 1-1, inositol requiring 1-1 (.1.2.3) Potri.007G059000 [exp] 759 / 0 AT2G17520 673 / 0.0 ARABIDOPSIS THALIANA INOSITOL REQUIRING 1-2, Endoribonuclease/protein kinase IRE1-like (.1) Potri.002G007201 [exp] 250 / 7e-78 AT5G24360 199 / 6e-60 ARABIDOPSIS THALIANA INOSITOL REQUIRING 1-1, inositol requiring 1-1 (.1.2.3) Potri.002G007150 [exp] 147 / 8e-41 AT5G24360 56 / 1e-09 ARABIDOPSIS THALIANA INOSITOL REQUIRING 1-1, inositol requiring 1-1 (.1.2.3) Potri.007G039800 [exp] 87 / 2e-17 AT5G66850 511 / 3e-173 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.005G033400 [exp] 84 / 3e-16 AT1G09000 680 / 0.0 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) Potri.005G135100 [exp] 83 / 4e-16 AT5G66850 589 / 0.0 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.002G129100 [exp] 82 / 9e-16 AT5G66850 441 / 5e-145 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.010G092000 [exp] 81 / 1e-15 AT3G06030 698 / 0.0 NPK1-related protein kinase 3 (.1) Potri.008G149500 [exp] 81 / 2e-15 AT3G06030 681 / 0.0 NPK1-related protein kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06479 [flax] [poplar] Ribonuc_2-5A Ribonuclease 2-5A CL0186 [flax] [poplar] Beta_propeller PF01011 [flax] [poplar] PQQ PQQ enzyme repeat CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10030730 pacid=23155235 polypeptide=Lus10030730 locus=Lus10030730.g ID=Lus10030730.BGIv1.0 annot-version=v1.0 ATGAAGCGATGTCTAATGCTCCGTATGTTGGTGATGGTCCTGTTATCGCCACTGATCAGGTGCATCTCGAGCTCAGCAGCAGCTAGCTCCCACTCATTTC TCACCGATCAAACTAGCCGAGCCTCCAGCCCCTACAAGTCTCTTCTCCCGCCCGTTCCTAAGCGTGAGTTTGCGGTTGTGGCTGCTTTGGATGGAACTAT TTATTTGGTGGATGCTACCTCAGGGAAGATTCGCTGGTCTCTGCCTACTGGTTCCCCTATATATTCTTCTTATCAAGCTACACCTGATGATGACGATGGT AAGCATAATGCATCTGGATTGAACAACGACTTATATTATGTCGACTGTGGGGATGATTGGGACCTCTATTTGCATAGCAAGAACCTAGGGAAACTGGAAA AACTCGCTCTAAGTCCTGATGAGTACATTAAGAGGACACCGCACGTATCGGAAGATGGTGAGATTACATTGGGGTCTAAAAAGACTACTGCTTTCCTAGT TGATGCCAAGACGGGGAGGATAGTTCGTTCTTTTAATTTGGATGCCCCTCCTAGTGCGGACCTTCAAAGTGCTGAAGAAACTGCCCTTCGTTTGGTACAG GGCCCTGACGGGTTGTTGGAATCGGGTGTTGATGACTTGGGAGCTATTGAGAGTCTAGTTTATATTACAAGAACAGACTATGTGCTACAGCACTACTCGC CGAATTCTAGCAAAGTCTTGTGGAATGTAGCATTTGCAGAGGTTGAGGCTGAGTTTCGATGTCAGGATGGTGACGGTTTCATTGGCGAGATTTCTCCGGA TGCAAATATGGGAACAAAGAACACGGAATGGCAATTTCCTTGTCAAGTGACGACTGTTGCTTTGCGGATTCGTGATCAGAACTCATTACCGTTTGAGAAA ATTGCAATTAGTCATCTAGGACTTGGAGGCAAACCTCGGTTCTTACCTTCCAAGGATCACATTCCGGCACTAGGAACTGTTTATAGAGTTCCATCAGCTC TTCCGACTAATGGAGGCAGATCTACTCATCTTGCATTGCCCTCATCTGATGGCCTTAGAGGAGGGAACGCTTATGCAATAAACAGTACTAGTTGGTCTTC AGAAATCTTCGCAAAGTCTCATATGTGGTCCAGCATAGCAACAATACTTTCCATTGTCGGTTTCATCATGTACAATTATCTAGCTGGTAAGAAACAGAGT AAAGTGCAAAATAGAACTCCCAAAAGGAAGAAAAATAAAAGACCCGGATCAGGAAACAACAAGAGCCAGTCTTCAAACACAAATGTTTCTTTGGAAAATA AGGTTCAAGAAACTGATGGACCTGAGGATATTGAAGGGGTTAATAGAAAGGTAAAACAGTTCCTGACTGATCTTGTTGATGGCCGAGAAGATGGACGCAA AATTGGTAGGTTATTGGTTTCCAACAAAGAGATTGCGAAGGGTAGCAATGGAACAATTGTGCTTGAGGGGATCTATGATGGCCGGCCTGTAGCTGTGAAA CGCCTTGTGCAGACCCATCATGATTTTGCTGTCAAAGAGATTCAGAACCTCATTGCGTCTGATCAGCATTCAAATATTGTTAGATGGTATGGCGTGGAGC ATGATCAAGATTTTATTTATCTTGCTCTGGAGCGTTGCAGCTGCAGCTTAAGTGACTTTATTTACGTGCACTCTGGAACTTTTCAAAGCCAAATGTATCC AGAGGGTCAAGCATGCAACAGTTTGCCAGAGGCTACGGTTCGATTATGTACAACTCTACAGCAGAATAAAAATGTTGACTTGTGGAAATCAAGTGGTTAT CCTTCTCCGCTTTTATTAAAACTTATGAGGGATGTAGTCTCTGGTCTTGCCCATTTGCATGAACTTGGGATCATTCATAGGGACTTGAAGCCTCAGAATG TCTTGATAATTAGGGAGAAAACATTTTGTGCTAAACTTTCAGACATGGGTATTAGCAAACGCCTCCTTGGGGACGTGTCTTCCTTAACTCTACATGCAAC TGGGTATGGAAGTTCAGGTTGGCAAGCTCCTGAACAACTTCTTCAGGGGCGGCAGACTCGTGCAGTAGATTTGTTTAGTTTAGGATGTGTACTGTTTTTC TGTATAACGGGGGGCAAGCACCCTTTTGGCGACAGCATTGAACGGGATGTAAATATTGTGAACGATAAAAAAGACCTATTCTTAATAGAGAGTATACCAG AAGCTGTGGATCTACTATCTTCCCTCCTGGATCCGAATCCTGATAAGAGGCCTAAGGCTGAAGAAGTTGTGGATCATCCCTTGTTCTGGACATCAGAGAA AAGACTGACATTTCTTCAAGATGTTAGTGATCGGGTCGAACTTGAAGACAGAGAGAGCGAGTCGGACCTTTTGAACGCATTAGAGAGCATCGGAACTGTC GCATTGGACGGCAAGTGGGACGAGAAGATGGAAGCTGCCTTCCTGAACAATATTGGCCGTTACAGGCGATACAAGTTTGACAGCGTCCGCGACTTGCTCC GCGTCATACGCAACAAGTCCCATCACTACAGGGAGCTCCCCAAAGAGATCCAGGAACTGCTTGGTTCGCATCCAGAAGGGTTTGAGAATTACTTTACGGT TCGATTCCCGAACCTGATGATCCAGGTGTACAAGGTGATATGCAGGCATTGCAGGGATGAGGAATTCTTCAGGAAATACTTGCAGACCAATGTAGTTTAA
AA sequence Show only first row Show all	>Lus10030730 pacid=23155235 polypeptide=Lus10030730 locus=Lus10030730.g ID=Lus10030730.BGIv1.0 annot-version=v1.0 MKRCLMLRMLVMVLLSPLIRCISSSAAASSHSFLTDQTSRASSPYKSLLPPVPKREFAVVAALDGTIYLVDATSGKIRWSLPTGSPIYSSYQATPDDDDG KHNASGLNNDLYYVDCGDDWDLYLHSKNLGKLEKLALSPDEYIKRTPHVSEDGEITLGSKKTTAFLVDAKTGRIVRSFNLDAPPSADLQSAEETALRLVQ GPDGLLESGVDDLGAIESLVYITRTDYVLQHYSPNSSKVLWNVAFAEVEAEFRCQDGDGFIGEISPDANMGTKNTEWQFPCQVTTVALRIRDQNSLPFEK IAISHLGLGGKPRFLPSKDHIPALGTVYRVPSALPTNGGRSTHLALPSSDGLRGGNAYAINSTSWSSEIFAKSHMWSSIATILSIVGFIMYNYLAGKKQS KVQNRTPKRKKNKRPGSGNNKSQSSNTNVSLENKVQETDGPEDIEGVNRKVKQFLTDLVDGREDGRKIGRLLVSNKEIAKGSNGTIVLEGIYDGRPVAVK RLVQTHHDFAVKEIQNLIASDQHSNIVRWYGVEHDQDFIYLALERCSCSLSDFIYVHSGTFQSQMYPEGQACNSLPEATVRLCTTLQQNKNVDLWKSSGY PSPLLLKLMRDVVSGLAHLHELGIIHRDLKPQNVLIIREKTFCAKLSDMGISKRLLGDVSSLTLHATGYGSSGWQAPEQLLQGRQTRAVDLFSLGCVLFF CITGGKHPFGDSIERDVNIVNDKKDLFLIESIPEAVDLLSSLLDPNPDKRPKAEEVVDHPLFWTSEKRLTFLQDVSDRVELEDRESESDLLNALESIGTV ALDGKWDEKMEAAFLNNIGRYRRYKFDSVRDLLRVIRNKSHHYRELPKEIQELLGSHPEGFENYFTVRFPNLMIQVYKVICRHCRDEEFFRKYLQTNVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24360		AtIRE1b, ATIRE1...	ARABIDOPSIS THALIANA INOSITOL ...		Lus10030730 [exp]	0	1
AT4G19040		EDR2	ENHANCED DISEASE RESISTANCE 2 ...		Lus10007596 [exp]	1.0	0.8836
AT5G24360		AtIRE1b, ATIRE1...	ARABIDOPSIS THALIANA INOSITOL ...		Lus10013212 [exp]	1.4	0.8749
AT5G35200			ENTH/ANTH/VHS superfamily prot...		Lus10005184 [exp]	1.7	0.8646
AT3G61710		AtBECLIN1, ATAT...	BECLIN1, AUTOPHAGY 6 (.1.2.3)		Lus10012631 [exp]	3.7	0.8314
AT1G30000		MNS3	alpha-mannosidase 3 (.1)		Lus10042830 [exp]	5.2	0.8216
AT4G30210		AR2, ATR2	P450 reductase 2 (.1.2)		Lus10019996 [exp]	7.2	0.8022
AT1G03080			kinase interacting (KIP1-like)...		Lus10014687 [exp]	7.4	0.8347
AT2G02860		ATSUT2, ATSUC3,...	ARABIDOPSIS THALIANA SUCROSE T...		Lus10012844 [exp]	7.5	0.8022
AT1G20110			RING/FYVE/PHD zinc finger supe...		Lus10013571 [exp]	8.2	0.8425
AT1G24330			ARM repeat superfamily protein...		Lus10006427 [exp]	8.3	0.7765

Compare expression of checked genes

Lus10030730 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.