Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33700 506 / 3e-180 Protein phosphatase 2C family protein (.1) AT3G51470 442 / 3e-155 Protein phosphatase 2C family protein (.1) AT2G25620 315 / 9e-105 AtDBP1 DNA-binding protein phosphatase 1 (.1) AT3G62260 295 / 2e-97 Protein phosphatase 2C family protein (.1.2) AT3G17250 275 / 4e-89 Protein phosphatase 2C family protein (.1) AT1G48040 272 / 2e-88 Protein phosphatase 2C family protein (.1) AT5G10740 160 / 2e-45 Protein phosphatase 2C family protein (.1) AT5G24940 156 / 3e-43 Protein phosphatase 2C family protein (.1) AT1G43900 153 / 1e-42 Protein phosphatase 2C family protein (.1) AT4G31750 151 / 1e-42 WIN2 HOPW1-1-interacting 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013213 [exp] 711 / 0 AT2G33700 541 / 0.0 Protein phosphatase 2C family protein (.1) Lus10016030 [exp] 599 / 0 AT2G33700 550 / 0.0 Protein phosphatase 2C family protein (.1) Lus10012244 [exp] 579 / 0 AT2G33700 533 / 0.0 Protein phosphatase 2C family protein (.1) Lus10008091 [exp] 317 / 8e-106 AT2G25620 488 / 1e-173 DNA-binding protein phosphatase 1 (.1) Lus10013124 [exp] 315 / 3e-105 AT2G25620 502 / 7e-179 DNA-binding protein phosphatase 1 (.1) Lus10038058 [exp] 296 / 2e-97 AT3G62260 442 / 4e-155 Protein phosphatase 2C family protein (.1.2) Lus10009993 [exp] 290 / 4e-95 AT3G62260 446 / 1e-156 Protein phosphatase 2C family protein (.1.2) Lus10001682 [exp] 290 / 6e-95 AT2G25620 381 / 6e-131 DNA-binding protein phosphatase 1 (.1) Lus10037832 [exp] 288 / 1e-94 AT1G48040 429 / 3e-150 Protein phosphatase 2C family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G253700 [exp] 558 / 0 AT2G33700 584 / 0.0 Protein phosphatase 2C family protein (.1) Potri.002G007500 [exp] 543 / 0 AT2G33700 560 / 0.0 Protein phosphatase 2C family protein (.1) Potri.005G102500 [exp] 469 / 1e-165 AT3G51470 496 / 8e-177 Protein phosphatase 2C family protein (.1) Potri.007G058700 [exp] 462 / 5e-163 AT3G51470 502 / 3e-179 Protein phosphatase 2C family protein (.1) Potri.014G115500 [exp] 322 / 1e-107 AT3G62260 461 / 2e-162 Protein phosphatase 2C family protein (.1.2) Potri.006G248400 [exp] 315 / 3e-105 AT2G25620 478 / 5e-169 DNA-binding protein phosphatase 1 (.1) Potri.018G033000 [exp] 313 / 2e-104 AT2G25620 478 / 3e-169 DNA-binding protein phosphatase 1 (.1) Potri.006G059600 [exp] 311 / 2e-103 AT2G25620 375 / 9e-129 DNA-binding protein phosphatase 1 (.1) Potri.018G115100 [exp] 306 / 6e-102 AT2G25620 350 / 4e-119 DNA-binding protein phosphatase 1 (.1) Potri.002G190400 [exp] 293 / 1e-96 AT3G62260 436 / 6e-153 Protein phosphatase 2C family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10030731 pacid=23155402 polypeptide=Lus10030731 locus=Lus10030731.g ID=Lus10030731.BGIv1.0 annot-version=v1.0 ATGGCTGCCGGCACCGATTTCTCCCCTCCGTATGGCTTCCTAGACGGCGGTGGTTACAACAATTCCACTAACAACAAGGATTTCAATCGAAACAACAACA TCTCCCCCAACTCCGACGACAATTCCGACAAGCAAATCCCTAATGGCAGGCCTCCCCGCCACGTCAACAACACCATTTCCTCCACCAGGCTCCTCGCCGC TGCTGATCTGGCAATGGATATTGGGATTGTGGTGAATAAGTCGCCGTCCGACGACAAGTTAGATTTCTCACCGGTGTTCCGATCAGGAAGCTGTGCTGAA GAAGGCCCCAAGCGGTATATGGAAGATGAACACGTTTGCATAGATGATCTCAACCAACATCTCAGTTCCTCCACCGCTGAAGACTTCTCTTCTTACCCAG GAGCTTTCTACGGGGTGTTTGATGGCCATGGAGGTACGGATGCAGCTTCATTTGTTAGAAAGAACATCTTGAGGTTAATAGTTGAGGACTCTCAGTTTCC TATATGCGTGGAGAAGGCGATTAAGAGTGCTTTTGTGAAAGCTGATTTCGCATTTGCTGATGATAGCTCACTTGATATTTCATCAGGCACCACAGCTCTT ACTGCCCTTATGCTTGGACGCACGTTGATTATTGCGAACGCCGGGGATTGTCGAGCAGTGTTAGGAAGACGAGGAAGAGCAATCGAGATGTCCAAAGACC ATAAGCCGAACTGCACATCCGAAAGACTTAGAATAGAGAAGCTCGGTGGGGTTATTTATGATGGATACCTCAACGGTCAGTTGTCTGTTTCTCGTGCACT CGGGGACTGGCATATGAAAGGGTCGAAAGGTTCCGCATGTCCCTTAAGCGCGGAACCCGAGTTGCAGGAAACGAATTTAACCGAGGAAGACGAGTTCTTG ATAATGGGGTGTGACGGCCTGTGGGATGTAATGACCAGCCAATGTGCAGTGTCAATCGTGCGGAAAGAGCTCATGCTACATAATGATCCCGAAAGATGTT CGAAAGAGTTGGTCAGGGAAGCACTGAAACGCAACACTTGCGATAATTTAACGGCGATAGTAGTGTGCTTCTCGCAAGATCCTCCCCCTCGGATCGAGAT CCCTCAGACACGAGTTCGGAGAAGCATATCGCTCGAAGGTCTCAACTTGCTGAAGGGTGTGCTGGAGCTGGATGGCAATTCATGA
AA sequence Show only first row Show all	>Lus10030731 pacid=23155402 polypeptide=Lus10030731 locus=Lus10030731.g ID=Lus10030731.BGIv1.0 annot-version=v1.0 MAAGTDFSPPYGFLDGGGYNNSTNNKDFNRNNNISPNSDDNSDKQIPNGRPPRHVNNTISSTRLLAAADLAMDIGIVVNKSPSDDKLDFSPVFRSGSCAE EGPKRYMEDEHVCIDDLNQHLSSSTAEDFSSYPGAFYGVFDGHGGTDAASFVRKNILRLIVEDSQFPICVEKAIKSAFVKADFAFADDSSLDISSGTTAL TALMLGRTLIIANAGDCRAVLGRRGRAIEMSKDHKPNCTSERLRIEKLGGVIYDGYLNGQLSVSRALGDWHMKGSKGSACPLSAEPELQETNLTEEDEFL IMGCDGLWDVMTSQCAVSIVRKELMLHNDPERCSKELVREALKRNTCDNLTAIVVCFSQDPPPRIEIPQTRVRRSISLEGLNLLKGVLELDGNS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33700			Protein phosphatase 2C family ...		Lus10030731 [exp]	0	1
AT3G49800			BSD domain-containing protein ...		Lus10019271 [exp]	2.4	0.8407
AT5G19630			alpha/beta-Hydrolases superfam...		Lus10031797 [exp]	3.2	0.8138
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Lus10036577 [exp]	3.7	0.8314
AT1G49740			PLC-like phosphodiesterases su...		Lus10012665 [exp]	6.0	0.7961
					Lus10012576 [exp]	8.8	0.8006
AT1G20110			RING/FYVE/PHD zinc finger supe...		Lus10017277 [exp]	11.2	0.8027
AT5G07270		XBAT33	XB3 ortholog 3 in Arabidopsis ...		Lus10027441 [exp]	11.6	0.7951
AT5G10840			Endomembrane protein 70 protei...		Lus10000222 [exp]	12.0	0.8239
AT3G19450		CAD-C, ATCAD4	CINNAMYL ALCOHOL DEHYDROGENASE...		Lus10019811 [exp]	13.0	0.8272
AT5G58950			Protein kinase superfamily pro...		Lus10015314 [exp]	13.5	0.7955

Compare expression of checked genes

Lus10030731 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.