Plant FIBer expression Database

Lus10030732 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G42480 161 / 5e-51 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013214
[exp]
130 / 4e-39 AT1G42480 110 / 9e-32 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G253600
[exp]
185 / 3e-60 AT1G42480 201 / 2e-66 unknown protein
Potri.002G007601
[exp]
54 / 7e-10 AT1G42480 62 / 4e-13 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF11938 DUF3456 TLR4 regulator and MIR-interacting MSAP
Representative CDS sequence
>Lus10030732 pacid=23155231 polypeptide=Lus10030732 locus=Lus10030732.g ID=Lus10030732.BGIv1.0 annot-version=v1.0
ATGGCGATGCTGGTGCCGGCCGTTTTGCTCCTCCTTACAATCACCGCGGTTTCAGCCGTCGACAACAAGTGCGCCGCTTGCAATGCTGTTGCGGAAAAGC
CGAAGAATCATCTTGATATGAGATATCGCCTAGATTCTAAAGGCCAACGCGAAGGAAAGGTGATCGATTACAGAGTCAGCGATCTGAGAGTTGTTGAACT
GTTGGATGGGCTTTGCGACAAGATGCAGAGTTATACACTCGAGAAAATAACTCCAACTAAACGGGAGTGGATCAAAGTAGATAACTGGGATAATTTGACC
ACAAACAAGCAAGAAGCTCGTGCGTATGCAAAAGAGATGTCATCCTATTGTGGAAGATTACTCGAGGAAACTGAAGATGAGTTGACAGAACTGATCAAGA
AAGGATCGGTTAGTGTAGGAGGTGTGAGCAAGGTTCTGTGTCAAGATTTAAGCAAGCACTGTCAACCAAGTGGCTCCCATCAGGATGACGATGGCGACGA
TGAAGCGGAGCTTTAG
AA sequence
>Lus10030732 pacid=23155231 polypeptide=Lus10030732 locus=Lus10030732.g ID=Lus10030732.BGIv1.0 annot-version=v1.0
MAMLVPAVLLLLTITAVSAVDNKCAACNAVAEKPKNHLDMRYRLDSKGQREGKVIDYRVSDLRVVELLDGLCDKMQSYTLEKITPTKREWIKVDNWDNLT
TNKQEARAYAKEMSSYCGRLLEETEDELTELIKKGSVSVGGVSKVLCQDLSKHCQPSGSHQDDDGDDEAEL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G42480 unknown protein Lus10030732
[exp]
0 1
AT1G54690 HTA3 ,G-H2AX ,G... histone H2A 3, GAMMA H2AX, gam... Lus10039691
[exp]
3.0 0.7213
AT3G62600 ATERDJ3B DNAJ heat shock family protein... Lus10032100
[exp]
3.7 0.7178
AT3G66654 Cyclophilin-like peptidyl-prol... Lus10012005
[exp]
5.1 0.7275
AT1G77350 unknown protein Lus10018864
[exp]
5.4 0.7513
AT5G37475 Translation initiation factor ... Lus10028057
[exp]
7.7 0.7187
AT1G20540 Transducin/WD40 repeat-like su... Lus10034576
[exp]
14.8 0.6931
AT3G25220 FKBP15-1 FK506-binding protein 15 kD-1 ... Lus10002339
[exp]
17.9 0.7204
AT1G47420 SDH5 succinate dehydrogenase 5 (.1) Lus10042661
[exp]
19.7 0.6729
AT2G28430 unknown protein Lus10022580
[exp]
19.7 0.7180
AT2G44620 MTACP1, MTACP-1 mitochondrial acyl carrier pro... Lus10019500
[exp]
20.6 0.7012

Lus10030732 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.