Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42360 358 / 9e-118 Galactose oxidase/kelch repeat superfamily protein (.1) AT5G42350 357 / 1e-117 Galactose oxidase/kelch repeat superfamily protein (.1) AT5G41510 43 / 0.0004 F-box and associated interaction domains-containing protein (.1) AT3G61590 43 / 0.0005 HWS, HS HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) AT5G41500 43 / 0.0005 F-box and associated interaction domains-containing protein (.1) AT3G49980 42 / 0.0008 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013215 [exp] 590 / 0 AT5G42350 647 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10029329 [exp] 45 / 7e-05 AT1G15670 195 / 3e-59 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10016214 [exp] 45 / 0.0001 AT2G44130 206 / 7e-63 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10001071 [exp] 42 / 0.0008 AT1G55270 655 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10042015 [exp] 41 / 0.0008 AT1G47790 48 / 7e-07 F-box and associated interaction domains-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G253500 [exp] 463 / 1e-158 AT5G42360 687 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.002G007700 [exp] 456 / 5e-156 AT5G42350 718 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.010G149000 [exp] 47 / 3e-05 AT5G49610 528 / 0.0 F-box family protein (.1) Potri.008G199601 [exp] 42 / 6e-05 AT3G06240 61 / 2e-12 F-box family protein (.1) Potri.014G093200 [exp] 45 / 7e-05 AT3G61590 538 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.009G066500 [exp] 44 / 0.0002 AT5G26960 365 / 7e-124 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.007G147000 [exp] 44 / 0.0002 AT3G59940 300 / 4e-98 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.002G166500 [exp] 44 / 0.0003 AT3G61590 542 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.011G137200 [exp] 43 / 0.0005 AT3G07870 94 / 1e-20 F-box and associated interaction domains-containing protein (.1) Potri.001G224200 [exp] 42 / 0.001 AT3G07870 105 / 4e-25 F-box and associated interaction domains-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10030733 pacid=23155186 polypeptide=Lus10030733 locus=Lus10030733.g ID=Lus10030733.BGIv1.0 annot-version=v1.0 ATGTTCCCGGAAGGCGTTGTTGCTAAAGAAGAGGCCGATTTGGAGGCTTCAACTGTTTCACGCCGTCTCGTCAGGACCGTTAGCCAGAAGCTCAGGAAGA AGACTGCTACTCTCCAGGATCTGGATTCTCCCACCAATAACGATGTTGCTTCCGGAATTTCATTGAAATGTCTTACTCTAATGGTTCGCGGTGGTGGCTG CAAAGTTGGCGCCGATACCACGGGCAGCGATGATTTCCCCGGCAGAGATCTCGGTGGCCGGAGGAGATCGTCAATGTCCAGCGAGGAAGCTAGCAGCAGG ACTACTCCTTACAGGCCAATCTGCGGTGGAGGGGAAGAAACTGGAGTGGATTGCTTCTCTTATGGAGTGAGGGATAAGTTCTGGAAGAAGAGCATCCGGA AGCTTGAAGATCGTCCTAATCTGATGATGGATCATGACAGCAGCAGCAAGCTGCACATCTTCCTTCCTGATGACGTTTTGGAGCTCTGTTTGGTAAGGCT TCCTTTGACCAGTCTCATGAATGCGCGCCTTGTTTGCAAGAAATGGAGGCATTTGACAACTACTCCTCGCTTCTTGAGGATGAGGTTTGAAGTCGCCTCG ATGAGGTATGCGAGATCAATGCCGGTCATAGGTGTGTCCGAGGTGAATGCGGATTTCTCTGTTGGTCAGAGTCATCGCCAGGAAAGGCGGTTGAGTAGGT TGCGAATCGGAGGGGTGTCGGATGTTTACGAGGATCCTCACAGGCTATCACTAAGACGTTGTCAGTATCGGAATGGGGTTGATCATGTGAATGACATGTC ATTCCTAACCAACAGAAAGTCCAACAAGTTCACCAGACAAAGAAGTAGCGACCACTTGAATAATGGTAAAGGTTGTAAAAGGTCCATACTCATTGTAGTT GGAGGTCTTGGATCTTGGGATGAACCTTTGGACTCTGGAGAAATCTATGATCCTGTTTCCAACAAGTGGATGGAAATCCAGAGGCTGCCTCTAGATTTCG GAGTAGTGAGTTCCGGTGTTGTTTGTAACAACGTCTTTTACGTGTACTCGGAGATAGACAAGCTGATTGGATATGATATAGAGAAGGGATATTGGATGGG AATCCAAACTACTCCTTTCCCTCCTCGAGTTGTTGAGTATTACCCTAAGCTCGTGTCGTGTAACGATCGGCTGTTTATGCTCTCGGTCTCCTGGTGTGAA GGGGATGGCCAAATCGGGCAGAGGAACAAGGCTGTTAGAAAACTATGGGAGCTGGATCTTGTTTGCCTTAATTGGAGCGAGGTCTCGGTGCACCCTGATG CTCCAATGGACTGGAATGCCATCTTCGTAGCTGACAAAAGCCGTATATATGGAATCGAAATGTTCAAGATATTTGGTCAGTTGTTGGATTTCCTGACTGT ATGTGATTTCAGTGGCTCGGGAGCGAACTGGAGGCATATCTCGAGGAGTCACATGGCTCACGAGCTCGATGCTTCTTCGTGCATGACGAAATCGTTGGCA GTCGTGCATCTTTGA
AA sequence Show only first row Show all	>Lus10030733 pacid=23155186 polypeptide=Lus10030733 locus=Lus10030733.g ID=Lus10030733.BGIv1.0 annot-version=v1.0 MFPEGVVAKEEADLEASTVSRRLVRTVSQKLRKKTATLQDLDSPTNNDVASGISLKCLTLMVRGGGCKVGADTTGSDDFPGRDLGGRRRSSMSSEEASSR TTPYRPICGGGEETGVDCFSYGVRDKFWKKSIRKLEDRPNLMMDHDSSSKLHIFLPDDVLELCLVRLPLTSLMNARLVCKKWRHLTTTPRFLRMRFEVAS MRYARSMPVIGVSEVNADFSVGQSHRQERRLSRLRIGGVSDVYEDPHRLSLRRCQYRNGVDHVNDMSFLTNRKSNKFTRQRSSDHLNNGKGCKRSILIVV GGLGSWDEPLDSGEIYDPVSNKWMEIQRLPLDFGVVSSGVVCNNVFYVYSEIDKLIGYDIEKGYWMGIQTTPFPPRVVEYYPKLVSCNDRLFMLSVSWCE GDGQIGQRNKAVRKLWELDLVCLNWSEVSVHPDAPMDWNAIFVADKSRIYGIEMFKIFGQLLDFLTVCDFSGSGANWRHISRSHMAHELDASSCMTKSLA VVHL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42360			Galactose oxidase/kelch repeat...		Lus10030733 [exp]	0	1
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Lus10032579 [exp]	3.2	0.8769
AT4G31490			Coatomer, beta subunit (.1)		Lus10027160 [exp]	5.8	0.8355
AT5G42350			Galactose oxidase/kelch repeat...		Lus10013215 [exp]	8.3	0.8687
AT1G62020			Coatomer, alpha subunit (.1)		Lus10037539 [exp]	9.3	0.8716
AT5G04990		ATSUN1	ARABIDOPSIS SAD1/UNC-84 DOMAIN...		Lus10034856 [exp]	12.0	0.8341
AT5G05010			clathrin adaptor complexes med...		Lus10018321 [exp]	12.0	0.8624
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Lus10043168 [exp]	15.0	0.8584
AT4G00110		GAE3	UDP-D-glucuronate 4-epimerase ...		Lus10030281 [exp]	21.2	0.8570
AT4G12650			Endomembrane protein 70 protei...		Lus10016072 [exp]	22.6	0.8622
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Lus10006396 [exp]	23.0	0.8471

Compare expression of checked genes

Lus10030733 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.