Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76390 853 / 0 PUB43 plant U-box 43, ARM repeat superfamily protein (.1.2) AT1G20780 842 / 0 ATPUB44, SAUL1 ARABIDOPSIS THALIANA PLANT U-BOX 44, senescence-associated E3 ubiquitin ligase 1 (.1) AT1G68940 415 / 2e-132 Armadillo/beta-catenin-like repeat family protein (.1.2.3) AT1G23030 54 / 3e-07 PUB11 ARM repeat superfamily protein (.1) AT1G71020 47 / 5e-05 ARM repeat superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013216 [exp] 1308 / 0 AT1G76390 1034 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10013050 [exp] 365 / 3e-113 AT1G68940 900 / 0.0 Armadillo/beta-catenin-like repeat family protein (.1.2.3) Lus10040659 [exp] 219 / 1e-60 AT1G76390 286 / 1e-82 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10018246 [exp] 212 / 5e-58 AT1G76390 272 / 8e-78 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10029113 [exp] 202 / 3e-55 AT1G68940 572 / 0.0 Armadillo/beta-catenin-like repeat family protein (.1.2.3) Lus10005988 [exp] 184 / 1e-48 AT1G76390 244 / 4e-68 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10034132 [exp] 166 / 1e-42 AT1G76390 162 / 5e-41 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10043453 [exp] 161 / 2e-41 AT1G76390 158 / 1e-39 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10029112 [exp] 120 / 2e-30 AT1G68940 214 / 5e-64 Armadillo/beta-catenin-like repeat family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G007800 [exp] 1085 / 0 AT1G76390 1028 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.005G253400 [exp] 1068 / 0 AT1G76390 963 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.008G112900 [exp] 420 / 2e-134 AT1G68940 927 / 0.0 Armadillo/beta-catenin-like repeat family protein (.1.2.3) Potri.010G136500 [exp] 414 / 6e-132 AT1G68940 913 / 0.0 Armadillo/beta-catenin-like repeat family protein (.1.2.3) Potri.002G175800 [exp] 179 / 5e-47 AT1G76390 201 / 2e-53 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.014G102000 [exp] 169 / 1e-43 AT1G76390 207 / 1e-55 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.001G024600 [exp] 166 / 5e-43 AT1G20780 107 / 1e-23 ARABIDOPSIS THALIANA PLANT U-BOX 44, senescence-associated E3 ubiquitin ligase 1 (.1) Potri.003G201000 [exp] 151 / 5e-38 AT1G68940 119 / 2e-27 Armadillo/beta-catenin-like repeat family protein (.1.2.3) Potri.012G019900 [exp] 144 / 2e-35 AT1G76390 206 / 3e-55 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.001G069501 [exp] 133 / 3e-32 AT1G68940 132 / 5e-31 Armadillo/beta-catenin-like repeat family protein (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030734 pacid=23155339 polypeptide=Lus10030734 locus=Lus10030734.g ID=Lus10030734.BGIv1.0 annot-version=v1.0 ATGATTGTCGATATGCTGAAGAGTAGCAGTCGCAGAGCTCGCTGTAGAGCCCTGCAAACTCTACGGATTGTGGTCGAGGATGATGATGATAATAAGGCAA TATTGGGTGAGGGTGATACAGTCCGATCGATCGTTAAGTTCTTGTCGCACGAACAATCGAAAGAGAGGGAGGAAGCTGTTTCGTTACTGTACGAGCTTTC GAAATCTATGGCTTTGTGTGAGAAGATTGGTTCAGTCAACGGGGCGATTCTTATATTAGTCGGAATGACAAGCAGCAAATCGGAGCATCTCGCTACTGTC GAAAGGGCTGACCGGATTCTTGAAAATCTAGCGCAATGCGAAAACAATGTGCGTGAGATGGCTGTGAATGGTAGACTGCAGCCTCTTCTGAATCACATTC TTGAAGGTCCGCATGAAACGAAGCTTTCGATGGCTTCTTATCTTGGCGAGCTAGTTCTGAACAACGACGTTCAGGTTCTCGTGGCGAAAACCGTTGGCTC GTCTCTAATAAGCATCATGAGAAGTGGCAATGCACAGTCAAGAGAAGCTTCTTTGAAAGCCTTGAACCAGATTTCGCATTTCGAGGGGAGTGCCAAGATT CTGATTGAGGAAGGAATCCTTCCTCCGCTTGTCAAGGATCTCTTCACCGTCGGTGCCAACACACTACCGATGCGTCTGAAGGAAGTCGCTGCGACGATTC TCGCCAATGTGGTGAATTCCGGATACGAATTTGATGCAATTTCGGTCGGATCTTATCACCACACGCTGGTCTCGGAAGAAATTGTACATAACCTACTCCA TCTGATCAGCAACACCGGTCCAGCTATAGAATGCAAACTTCTCCAGGTTCTGGTCGGACTAACCGGTTCGCAAGCCACCGTTTCGAATGTTGTAGCCGCG ATCAAAAGCTCCGGAGCTATCATCAGTTTGGTTCAATTCATTGAGGCCCCGCAGCAGGATTTACGATTAGCTTCGATCAAGCTTCTCCGGAATTTATCTC CGCATATCGGTCAGGAGCTAGCCGATGCTCTTCGTGGCACGGCAGGACAGCTAGGCAGTCTAATCCAAGTCGTATCTGAAAACTTGGGGATTTCGGAAGA GCAAGCGGCCGCCATCAGTCTTCTGGCCGAACTCCCCGAGCAAGATTTGGGACTCACGAGACAGATGCTCGACGAAGGAGCGTTCGAACTTATTTACACG AGAGTTGTAAGGATTCGGCAAGGCGAGATTAGAGGGACGCGATTCGTTACACCATTTTTAGAAGGACTCGTAGGAGTCCTCGCGAGGATTACATTCGTTC TGGGAGAAGAGCCTGATTCGGTCGCGTTCTGTCGCGATCTCAACCTAGCGGGATTGTTCATCGAGTTACTACAGTCGAACGGACTCGATAATGTACAGAT GAGTTCGGCAATGGCGTTGGAGAATCTCTCCCAGGAGACGAAAAACTTAACGAGACTGCCCGACTTGCCTTCTCTGAAATTCTGTTCGTCGATTTTCCCG TGTTTTAGCAGGCAGCCGGTGATAATGGGACTGTGCAGGCTGCATCGGGGAACGTGTTCGTTGAACGAGACGTTCTGTCTTCTCGAAGGGCAAGGAGTCG AGAAGCTGGTGGCTCTTCTCGACCATAATAACGAGATGGTGGTCGAGGCGGCGCTTGCTGCTGTTTGTACACTGTTGGAGGATGGTGTGGACGTTGAGCA AGGGATGAGAGTGTTGTACGATGCGGAAGGAATCAGACCGATTCTCGATGTATTGATTGAGAAACGAACTGAGAATCTGAGGAGGAGGGCTGTGTGGGCA GTGGAGAGGCTGTTGAGGTTTGATGATATTGCGAATGAAGTTTCTGGGGATCCTAATGTGAGTACGGCTCTTGTTGATGCCTTCCAGCATGCGGATTACC GGACTCGACAGATCGCTGAGCGTGCTCTAAAGCATGTAGATAGGATACCAAACTTCTCTGGGGTGTTTCCGAACTTAGGCGGGTGA
AA sequence Show only first row Show all	>Lus10030734 pacid=23155339 polypeptide=Lus10030734 locus=Lus10030734.g ID=Lus10030734.BGIv1.0 annot-version=v1.0 MIVDMLKSSSRRARCRALQTLRIVVEDDDDNKAILGEGDTVRSIVKFLSHEQSKEREEAVSLLYELSKSMALCEKIGSVNGAILILVGMTSSKSEHLATV ERADRILENLAQCENNVREMAVNGRLQPLLNHILEGPHETKLSMASYLGELVLNNDVQVLVAKTVGSSLISIMRSGNAQSREASLKALNQISHFEGSAKI LIEEGILPPLVKDLFTVGANTLPMRLKEVAATILANVVNSGYEFDAISVGSYHHTLVSEEIVHNLLHLISNTGPAIECKLLQVLVGLTGSQATVSNVVAA IKSSGAIISLVQFIEAPQQDLRLASIKLLRNLSPHIGQELADALRGTAGQLGSLIQVVSENLGISEEQAAAISLLAELPEQDLGLTRQMLDEGAFELIYT RVVRIRQGEIRGTRFVTPFLEGLVGVLARITFVLGEEPDSVAFCRDLNLAGLFIELLQSNGLDNVQMSSAMALENLSQETKNLTRLPDLPSLKFCSSIFP CFSRQPVIMGLCRLHRGTCSLNETFCLLEGQGVEKLVALLDHNNEMVVEAALAAVCTLLEDGVDVEQGMRVLYDAEGIRPILDVLIEKRTENLRRRAVWA VERLLRFDDIANEVSGDPNVSTALVDAFQHADYRTRQIAERALKHVDRIPNFSGVFPNLGG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Lus10030734 [exp]	0	1
AT2G31560			Protein of unknown function (D...		Lus10027022 [exp]	1.0	0.8696
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Lus10003389 [exp]	4.0	0.7819
AT1G14140			Mitochondrial substrate carrie...		Lus10030443 [exp]	5.7	0.8234
AT1G12855			F-box family protein (.1)		Lus10029699 [exp]	7.1	0.8055
AT1G61390			S-locus lectin protein kinase ...		Lus10018407 [exp]	11.4	0.7621
AT2G15580			RING/U-box superfamily protein...		Lus10001688 [exp]	11.5	0.7659
AT1G54340		ICDH	isocitrate dehydrogenase (.1)		Lus10010431 [exp]	12.0	0.7964
AT2G34690		ACD11	ACCELERATED CELL DEATH 11, Gly...		Lus10038537 [exp]	12.6	0.8010
AT5G18130			unknown protein		Lus10005702 [exp]	14.7	0.7793
AT1G53590		NTMCTYPE6.1 ,NT...	Calcium-dependent lipid-bindin...		Lus10005578 [exp]	15.5	0.7542

Compare expression of checked genes

Lus10030734 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.