Plant FIBer expression Database

Lus10030735 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G43822 197 / 3e-64 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013216
[exp]
311 / 6e-100 AT1G76390 1034 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G253200
[exp]
253 / 4e-86 AT5G43822 171 / 3e-54 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info
Representative CDS sequence
>Lus10030735 pacid=23155187 polypeptide=Lus10030735 locus=Lus10030735.g ID=Lus10030735.BGIv1.0 annot-version=v1.0
ATGGAGGGTATGGTGAAGAAGTATCAGCAGCGGCATAGAAAGGCTAGAGATGAAATGGACAAATGGGAAGCTCTTCAATCCCGCCTACTTTCTCAGTTCC
GGAATGCTTCTGCCATCATCGGAAGATTACCAGCGATCAAAAGCTCAACCAATTTCGGAACTTTGAATAGCATCGCCGGATTTAAAGATGAAGTATTGAG
AAACCAGTTGGATTCTCTTGGCGCCATTTTCCGTTCCATGAACAGAACAATGGAAGAGTTTCGTCTGATTGTATTGTCTCTAGAGAAGATGCATCGTGAT
GGAAAACAGTTAGTAAACCAGGGTTCTGCCAGTAGTAAAAAACAATTGCGGCAAAGGATTGGCGTTAAGCCGTCTCTGGAAGATTGCTTGGATGGCCTCA
TGCGTCTCCATGATATGCATCAATCCGAGTACCTTCTCAAGTTATCAGTGGTTTCCGCACTTTCACCACTTACCATGAAGCCAAGCTCCAGTGATTTAAA
TGCCCTGCACCAACTCTTGATTGATGAGCCTAATATCCCCAAAGAAGAAGGTAAGAACAAAATGCTAGAACTAGCTTATAGAAAGAAATCTCCTTTTGTT
CCATTAGAGAATATGGTGCAGAATGTCTGTCCTGATTTACTGTGA
AA sequence
>Lus10030735 pacid=23155187 polypeptide=Lus10030735 locus=Lus10030735.g ID=Lus10030735.BGIv1.0 annot-version=v1.0
MEGMVKKYQQRHRKARDEMDKWEALQSRLLSQFRNASAIIGRLPAIKSSTNFGTLNSIAGFKDEVLRNQLDSLGAIFRSMNRTMEEFRLIVLSLEKMHRD
GKQLVNQGSASSKKQLRQRIGVKPSLEDCLDGLMRLHDMHQSEYLLKLSVVSALSPLTMKPSSSDLNALHQLLIDEPNIPKEEGKNKMLELAYRKKSPFV
PLENMVQNVCPDLL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G43822 Pentatricopeptide repeat (PPR)... Lus10030735
[exp]
0 1
AT5G40530 S-adenosyl-L-methionine-depend... Lus10002522
[exp]
2.4 0.8123
AT3G52170 DNA binding (.1.2) Lus10028828
[exp]
3.5 0.7974
AT2G02160 C3HZnF CCCH-type zinc finger family p... Lus10014490
[exp]
4.7 0.7643
AT5G38890 Nucleic acid-binding, OB-fold-... Lus10003098
[exp]
11.1 0.7259
Lus10026259
[exp]
11.2 0.7389
AT4G14050 Pentatricopeptide repeat (PPR)... Lus10040634
[exp]
12.2 0.7847
AT4G13650 Pentatricopeptide repeat (PPR)... Lus10040997
[exp]
12.7 0.7747
AT5G55220 trigger factor type chaperone ... Lus10000783
[exp]
13.1 0.7886
AT4G15820 unknown protein Lus10034169
[exp]
15.3 0.7479
AT3G18580 Nucleic acid-binding, OB-fold-... Lus10038946
[exp]
16.2 0.6808

Lus10030735 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.