Plant FIBer expression Database

Lus10030736 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G20770 125 / 5e-35 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013217
[exp]
327 / 1e-113 AT1G20770 140 / 8e-41 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G253101
[exp]
152 / 3e-45 AT1G20770 160 / 1e-49 unknown protein
PFAM info
Representative CDS sequence
>Lus10030736 pacid=23155388 polypeptide=Lus10030736 locus=Lus10030736.g ID=Lus10030736.BGIv1.0 annot-version=v1.0
ATGGCAGAAGCGGAGGGCACGACTGAAATTAAGATGGAAGGGAGAACCGTTGAGAGCGAACAGATTCAACAGGGCCAACATATAGAAGAAGAAGAAGAAC
GGAATCAAGCTGTTTTGAGACTTCTGGATTCGATGGATGGCTACTTAACCCTCTACGATTCTCTATCTTCTACACTTCGTCAGGGATGGTTTGACTTAGC
TTGTGCCCGGCATTCCATGGGGACTTCACGTATCAGCTATGCTATGCTGGATCTTAAAGAGCACGCTGCTTCTACTTCACTGCAGATAATCTCAGATGGT
TATGATGGTAGTTCATTCGCTCCACATTTTGCCCCTACATTATATTTCGATTTTATGCTAAATGCTAATGGATATTATGGTGCGAACTTCAACTATAGCT
TTCTTTTCTCTCCAGAGGATTCATCAGGAAAGCATCCACGCTTCCAGCTGCGGAAATGGGCATCTTTGGACAAGAAAAGGTGCTTTCTTGACGATCAAAG
CTCGAAAGAGCATAAGGAATCGGGTGGCACTTTGAAGCAAAGAAATCGTGTTGGTTCTCAGCTCCAGGACAAAACCAAGTCTGATAATGGAGCTCTGCTT
GACGTTGATGACAGGGTAAAGAATGAGCGATGCAAATCCTTAGCTGTGTTTGGAACTATGGTTTCTCCAAAGCTTCGAGCTTCCCAACTGTCATTTGAGA
AAGCAATTGAGACAATCGTCGAACTGGCCAATCTTCGTTCGGAGATCCTTGCTGTGGGAAATCAAGTCCACAGACATTCAGAAGTTGCCAAGACACAGAT
TGATTAA
AA sequence
>Lus10030736 pacid=23155388 polypeptide=Lus10030736 locus=Lus10030736.g ID=Lus10030736.BGIv1.0 annot-version=v1.0
MAEAEGTTEIKMEGRTVESEQIQQGQHIEEEEERNQAVLRLLDSMDGYLTLYDSLSSTLRQGWFDLACARHSMGTSRISYAMLDLKEHAASTSLQIISDG
YDGSSFAPHFAPTLYFDFMLNANGYYGANFNYSFLFSPEDSSGKHPRFQLRKWASLDKKRCFLDDQSSKEHKESGGTLKQRNRVGSQLQDKTKSDNGALL
DVDDRVKNERCKSLAVFGTMVSPKLRASQLSFEKAIETIVELANLRSEILAVGNQVHRHSEVAKTQID

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G20770 unknown protein Lus10030736
[exp]
0 1
AT3G10530 Transducin/WD40 repeat-like su... Lus10035740
[exp]
1.7 0.8716
AT3G49890 unknown protein Lus10019282
[exp]
3.0 0.7962
AT3G02860 C2H2ZnF zinc ion binding (.1.2) Lus10037693
[exp]
3.5 0.8338
AT4G01040 Glycosyl hydrolase superfamily... Lus10005946
[exp]
4.5 0.8074
AT5G63000 Mitochondrial import inner mem... Lus10027691
[exp]
7.3 0.8057
AT5G63010 Transducin/WD40 repeat-like su... Lus10039042
[exp]
8.5 0.8529
AT1G80560 ATIMD2 ARABIDOPSIS ISOPROPYLMALATE DE... Lus10041077
[exp]
10.9 0.7822
AT1G04590 EMB2748 unknown protein Lus10015943
[exp]
12.0 0.7868
AT1G69630 F-box/RNI-like superfamily pro... Lus10024695
[exp]
12.6 0.7806
AT2G06010 ORG4 OBP3-responsive gene 4 (.1) Lus10020742
[exp]
13.6 0.7277

Lus10030736 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.