Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76680 258 / 1e-84 OPR1, ATOPR1 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 1, 12-oxophytodienoate reductase 1 (.1.2) AT1G76690 255 / 9e-84 OPR2, ATOPR2 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) AT1G18020 230 / 4e-75 FMN-linked oxidoreductases superfamily protein (.1) AT1G17990 230 / 4e-75 FMN-linked oxidoreductases superfamily protein (.1.2) AT1G09400 224 / 3e-72 FMN-linked oxidoreductases superfamily protein (.1) AT2G06050 194 / 2e-59 AtOPR3, DDE1, OPR3, OPDA-REDUCTASE DELAYED DEHISCENCE 1, oxophytodienoate-reductase 3 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013218 [exp] 347 / 7e-120 AT1G76690 553 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) Lus10001276 [exp] 254 / 3e-83 AT1G76680 597 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 1, 12-oxophytodienoate reductase 1 (.1.2) Lus10009473 [exp] 247 / 6e-78 AT1G76690 568 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) Lus10001275 [exp] 233 / 8e-75 AT1G76680 544 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 1, 12-oxophytodienoate reductase 1 (.1.2) Lus10001274 [exp] 201 / 6e-63 AT1G76690 526 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) Lus10028663 [exp] 197 / 1e-60 AT2G06050 576 / 0.0 DELAYED DEHISCENCE 1, oxophytodienoate-reductase 3 (.1.2.3) Lus10000966 [exp] 192 / 8e-59 AT2G06050 576 / 0.0 DELAYED DEHISCENCE 1, oxophytodienoate-reductase 3 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G102700 [exp] 269 / 6e-89 AT1G76690 629 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) Potri.013G102750 [exp] 251 / 2e-82 AT1G76690 580 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) Potri.003G004200 [exp] 251 / 3e-82 AT1G76680 558 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 1, 12-oxophytodienoate reductase 1 (.1.2) Potri.013G102800 [exp] 250 / 9e-82 AT1G76690 576 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) Potri.013G103000 [exp] 249 / 3e-81 AT1G76690 568 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) Potri.003G004600 [exp] 247 / 1e-80 AT1G76680 559 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 1, 12-oxophytodienoate reductase 1 (.1.2) Potri.013G102900 [exp] 245 / 6e-80 AT1G76690 571 / 0.0 ARABIDOPSIS 12-OXOPHYTODIENOATE REDUCTASE 2, 12-oxophytodienoate reductase 2 (.1) Potri.006G142800 [exp] 189 / 2e-57 AT2G06050 603 / 0.0 DELAYED DEHISCENCE 1, oxophytodienoate-reductase 3 (.1.2.3) Potri.004G212100 [exp] 186 / 1e-56 AT2G06050 536 / 0.0 DELAYED DEHISCENCE 1, oxophytodienoate-reductase 3 (.1.2.3) Potri.018G065600 [exp] 185 / 4e-56 AT2G06050 599 / 0.0 DELAYED DEHISCENCE 1, oxophytodienoate-reductase 3 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF00724 [flax] [poplar] Oxidored_FMN NADH:flavin oxidoreductase / NADH oxidase family
Representative CDS sequence Show only first row Show all	>Lus10030737 pacid=23155406 polypeptide=Lus10030737 locus=Lus10030737.g ID=Lus10030737.BGIv1.0 annot-version=v1.0 ATGGCGGAATCAGCTCAGCCTCTGCTGACTCCTTACAAAATGGGCAACTTCAGTCTCTCTCACAGGGTAGTTTTGGCACCGCTGACCAGGATGAGATCGT ACGGGAAGATCCCTCAGCCACACGCCGTCTTGTACTACTCCCAAAGAACGCCACCTGGTGGTCTCGTGATTGCTGAAGCCACCGCCATTTCCAACACTTC TATCGGTTACTCAAATGTTCCTGGAATCTGGACTGAAGAGCAAACCAATTGTGCTGTGCATGAGAAAGGAGGCATCTTCTTTTGCCAGATTTGGCATTCT GGAAGAGTCTCTGATTACTGCTTTCAACCAAATGGACAGCCTCCCGTCTCCTGTACGGATAAGCCGATTACAGCTGAGCCCCAGATCGATGGCAGTAAAG CTCCTGCATATCCTGCTCCCTGTAGACTCGAAACAGAGGAGATTCCTCACATTGTAAACGACTTTGCGGTTGCAGCAAGGAATGCCATGGAAGCTGGTTT TGATGGCGTGGAGATCCACGGAGCCAATGGATATATCGTTGACCAGTTTGATGCGGTGGAGAGCGAGCACAGCTTGTTGCCCACGAGGAAGGCCTTTGGA GGTACGTTTATGATCGCCGGAGGATACACTCAATGCAACGGGAATGAAGTGGTTGCCGATGGAGGTGCGGATTTAGTTGCATTCGGGCGTTTGTTCTTGG CGAATCCAGACATGCCCAGAAGATTCGAGCTGAATAAGTATAACAGGGGCACTTTCTATACCGATGACCCTGTTGTTGGATGCTCCGACTATCCATTTCT CGACCGAGTAAAAGTCTAG
AA sequence Show only first row Show all	>Lus10030737 pacid=23155406 polypeptide=Lus10030737 locus=Lus10030737.g ID=Lus10030737.BGIv1.0 annot-version=v1.0 MAESAQPLLTPYKMGNFSLSHRVVLAPLTRMRSYGKIPQPHAVLYYSQRTPPGGLVIAEATAISNTSIGYSNVPGIWTEEQTNCAVHEKGGIFFCQIWHS GRVSDYCFQPNGQPPVSCTDKPITAEPQIDGSKAPAYPAPCRLETEEIPHIVNDFAVAARNAMEAGFDGVEIHGANGYIVDQFDAVESEHSLLPTRKAFG GTFMIAGGYTQCNGNEVVADGGADLVAFGRLFLANPDMPRRFELNKYNRGTFYTDDPVVGCSDYPFLDRVKV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76680		OPR1, ATOPR1	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Lus10030737 [exp]	0	1
AT4G39850		AtABCD1, ACN2, ...	PEROXISOME DEFECTIVE 3, COMATO...		Lus10041691 [exp]	4.1	0.6186
AT4G18540			unknown protein		Lus10036093 [exp]	4.5	0.6182
AT1G05280			Protein of unknown function (D...		Lus10027153 [exp]	11.3	0.6155
AT2G21660		CCR2, ATGRP7, G...	GLYCINE-RICH RNA-BINDING PROTE...		Lus10026344 [exp]	22.5	0.6100
AT2G36540			Haloacid dehalogenase-like hyd...		Lus10019759 [exp]	42.4	0.5573
AT1G75800			Pathogenesis-related thaumatin...		Lus10013560 [exp]	49.8	0.5894
AT4G19230		CYP707A1	"cytochrome P450, family 707, ...		Lus10035685 [exp]	55.7	0.5889
AT5G36890		BGLU42	beta glucosidase 42 (.1.2)		Lus10026861 [exp]	58.0	0.5879
AT1G11720		ATSS3	starch synthase 3 (.1.2)		Lus10006780 [exp]	77.1	0.5583
AT5G10190			Major facilitator superfamily ...		Lus10027264 [exp]	79.7	0.5511

Compare expression of checked genes

Lus10030737 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.