Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20696 140 / 4e-43 NFD3, NFD03, HMGB3 high mobility group B3 (.1.2.3) AT1G20693 139 / 2e-42 HMGBETA1, NFD2, NFD02, HMGB2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) AT3G51880 119 / 2e-34 AtHMGB1, NFD1, HMGB1 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) AT2G17560 107 / 2e-30 NFD4, NFD04, HMGB4 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D4, high mobility group B4 (.1.2.3) AT4G35570 100 / 3e-27 NFD5, NFD05, HMGD, HMGB5 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR 5, high mobility group B5 (.1) AT5G23420 75 / 1e-16 HMGB6 high-mobility group box 6 (.1.2) AT2G34450 70 / 2e-15 HMG-box (high mobility group) DNA-binding family protein (.1), HMG-box (high mobility group) DNA-binding family protein (.2) AT4G11080 60 / 1e-10 3xHMG-box1 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) AT4G23800 57 / 9e-10 3xHMG-box2, AT4G23800 3xHigh Mobility Group-box2, HMG (high mobility group) box protein (.1), HMG (high mobility group) box protein (.2) AT3G28730 44 / 3e-05 NFD, SSRP1, ATHMG NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D, high mobility group (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012250 [exp] 167 / 8e-51 AT1G20696 189 / 3e-59 high mobility group B3 (.1.2.3) Lus10013219 [exp] 155 / 6e-49 AT1G20693 165 / 2e-53 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) Lus10012252 [exp] 144 / 1e-44 AT1G20693 164 / 1e-53 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) Lus10016025 [exp] 144 / 3e-44 AT1G20693 192 / 7e-64 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) Lus10028298 [exp] 111 / 6e-31 AT3G51880 134 / 6e-40 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) Lus10040192 [exp] 110 / 7e-31 AT3G51880 140 / 1e-42 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) Lus10035511 [exp] 104 / 8e-28 AT3G51880 152 / 2e-46 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) Lus10041009 [exp] 87 / 6e-21 AT5G23420 178 / 1e-55 high-mobility group box 6 (.1.2) Lus10016695 [exp] 85 / 1e-20 AT1G20693 121 / 2e-35 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G252600 [exp] 147 / 2e-45 AT1G20696 147 / 7e-46 high mobility group B3 (.1.2.3) Potri.005G101400 [exp] 132 / 1e-39 AT1G20696 112 / 2e-32 high mobility group B3 (.1.2.3) Potri.002G009000 [exp] 129 / 1e-38 AT1G20696 146 / 8e-46 high mobility group B3 (.1.2.3) Potri.010G189900 [exp] 111 / 3e-31 AT3G51880 129 / 3e-38 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) Potri.008G067400 [exp] 99 / 2e-26 AT3G51880 100 / 4e-27 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) Potri.007G000900 [exp] 79 / 2e-18 AT5G23420 156 / 8e-48 high-mobility group box 6 (.1.2) Potri.004G131400 [exp] 64 / 6e-13 AT2G34450 132 / 6e-40 HMG-box (high mobility group) DNA-binding family protein (.1), HMG-box (high mobility group) DNA-binding family protein (.2) Potri.003G138000 [exp] 65 / 1e-12 AT4G11080 302 / 1e-97 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Potri.001G093700 [exp] 64 / 3e-12 AT4G11080 325 / 2e-106 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Potri.011G168800 [exp] 40 / 0.0003 AT3G13350 307 / 3e-104 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0114 [flax] [poplar] HMG-box PF00505 [flax] [poplar] HMG_box HMG (high mobility group) box
Representative CDS sequence Show only first row Show all	>Lus10030738 pacid=23155249 polypeptide=Lus10030738 locus=Lus10030738.g ID=Lus10030738.BGIv1.0 annot-version=v1.0 ATGAAGGGAGGTAATTCGAAGTCGGATGCGAAGAATTCCAAGCTCTCTGTGACTAAGAAGCCTACCAAGGTGACTCAAAAAGCGGGTAAAGCAGCCAAAG ACCCGAACAAGCCAAAGAGGCCTCCCAGCGCCTTCTTCGTCTTCATGCTCTCTGTGACTAAGAAGCCTACCAAGGTGACTCAAAAAGCGGGTAAAGCAGC CAAAGACCCGAACAAGCCAAAGAGGCCTCCCAGCGCCTTCTTCGTCTTCATGGAGGACTTCAGGGTGCAGTTTAAGAAGGACCATCCCAAGAACAAATCA GTTGCTGCTGTTGGAAAAGCTGCTGGAGAGAAATGGAAGTCATTGACTGAAGCTGAAAAGCAACCCTACATCGCCACAGCTGAGAAGAGGAAAGTGGAGT ATGAGAAGAAGATGAATGCCTACAATAAGGAACAGGCTGAGGGCCCCAAAGAGGAAGAGGAGTCTGAGAAGTCTATGTCCGAGGTACACGATGAGGATGA CGATGAAGATGGTAGTGACGAGGAGGATGACGATGACGAGTAA
AA sequence Show only first row Show all	>Lus10030738 pacid=23155249 polypeptide=Lus10030738 locus=Lus10030738.g ID=Lus10030738.BGIv1.0 annot-version=v1.0 MKGGNSKSDAKNSKLSVTKKPTKVTQKAGKAAKDPNKPKRPPSAFFVFMLSVTKKPTKVTQKAGKAAKDPNKPKRPPSAFFVFMEDFRVQFKKDHPKNKS VAAVGKAAGEKWKSLTEAEKQPYIATAEKRKVEYEKKMNAYNKEQAEGPKEEEESEKSMSEVHDEDDDEDGSDEEDDDDE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20693		HMGBETA1, NFD2,...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10030738 [exp]	0	1
AT3G16990			Haem oxygenase-like, multi-hel...		Lus10016885 [exp]	1.0	0.9519
AT1G20693		HMGBETA1, NFD2,...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10013219 [exp]	2.2	0.9234
AT1G22800			S-adenosyl-L-methionine-depend...		Lus10018987 [exp]	2.4	0.9359
AT3G07740		HXA2, HXA02, HA...	homolog of yeast ADA2 2A (.1.2...		Lus10017553 [exp]	2.8	0.9385
AT4G31805			WRKY family transcription fact...		Lus10007445 [exp]	3.5	0.9023
					Lus10040046 [exp]	4.6	0.8978
AT5G19960			RNA-binding (RRM/RBD/RNP motif...		Lus10017757 [exp]	5.1	0.9016
AT5G48340			unknown protein		Lus10041085 [exp]	5.7	0.9281
AT3G04940		ATCYSD1	cysteine synthase D1 (.1)		Lus10004118 [exp]	6.0	0.8893
AT4G08690			Sec14p-like phosphatidylinosit...		Lus10020911 [exp]	6.5	0.9101

Compare expression of checked genes

Lus10030738 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.