Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20670 318 / 1e-99 DNA-binding bromodomain-containing protein (.1) AT1G76380 301 / 5e-94 DNA-binding bromodomain-containing protein (.1.2.3) AT5G55040 229 / 1e-64 DNA-binding bromodomain-containing protein (.1.2) AT3G01770 64 / 2e-10 ATBET10 bromodomain and extraterminal domain protein 10 (.1) AT5G46550 64 / 2e-10 DNA-binding bromodomain-containing protein (.1) AT5G63320 61 / 1e-09 NPX1 nuclear protein X1 (.1.2.3) AT1G32750 61 / 3e-09 GTD1, TAF1, HAF1, HAC13, HAF01 TBP-ASSOCIATED FACTOR 1, HISTONE ACETYLTRANSFERASE OF THE TAFII250 FAMILY 1, HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 13, HAC13 protein (HAC13) (.1) AT5G14270 60 / 3e-09 ATBET9 bromodomain and extraterminal domain protein 9 (.1.2) AT3G54610 59 / 8e-09 ATGCN5, HAG1, HAG01, HAC3, BGT, HAT1, GCN5 HISTONE ACETYLTRANSFERASE 1, general control non-repressible 5, BIG TOP, histone acetyltransferase of the GNAT family 1 (.1) AT2G34900 56 / 3e-08 GTE1, GTE01, IMB1 IMBIBITION-INDUCIBLE 1, GLOBAL TRANSCRIPTION FACTOR GROUP E1, Transcription factor GTE6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013220 [exp] 838 / 0 AT1G20670 431 / 5e-143 DNA-binding bromodomain-containing protein (.1) Lus10043121 [exp] 228 / 4e-64 AT5G55040 533 / 9e-176 DNA-binding bromodomain-containing protein (.1.2) Lus10032629 [exp] 218 / 1e-60 AT5G55040 525 / 1e-172 DNA-binding bromodomain-containing protein (.1.2) Lus10001391 [exp] 161 / 1e-42 AT1G20670 306 / 1e-96 DNA-binding bromodomain-containing protein (.1) Lus10022999 [exp] 158 / 2e-41 AT1G20670 316 / 2e-100 DNA-binding bromodomain-containing protein (.1) Lus10011989 [exp] 70 / 4e-12 AT5G46550 244 / 3e-74 DNA-binding bromodomain-containing protein (.1) Lus10002784 [exp] 66 / 7e-11 AT5G46550 241 / 3e-73 DNA-binding bromodomain-containing protein (.1) Lus10033624 [exp] 63 / 5e-10 AT1G06230 494 / 2e-163 global transcription factor group E4 (.1.2.3) Lus10033623 [exp] 63 / 6e-10 AT1G06230 493 / 9e-164 global transcription factor group E4 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G009100 [exp] 394 / 2e-128 AT1G20670 449 / 2e-149 DNA-binding bromodomain-containing protein (.1) Potri.005G252200 [exp] 372 / 1e-119 AT1G20670 432 / 2e-142 DNA-binding bromodomain-containing protein (.1) Potri.004G206200 [exp] 287 / 6e-87 AT1G20670 316 / 2e-97 DNA-binding bromodomain-containing protein (.1) Potri.009G167500 [exp] 280 / 3e-84 AT1G20670 316 / 1e-97 DNA-binding bromodomain-containing protein (.1) Potri.016G141400 [exp] 122 / 1e-28 AT1G20670 142 / 4e-35 DNA-binding bromodomain-containing protein (.1) Potri.006G112000 [exp] 119 / 9e-28 AT1G20670 142 / 4e-35 DNA-binding bromodomain-containing protein (.1) Potri.019G132601 [exp] 115 / 1e-26 AT1G20670 137 / 1e-33 DNA-binding bromodomain-containing protein (.1) Potri.005G217400 [exp] 71 / 9e-13 AT3G54610 707 / 0.0 HISTONE ACETYLTRANSFERASE 1, general control non-repressible 5, BIG TOP, histone acetyltransferase of the GNAT family 1 (.1) Potri.002G045900 [exp] 71 / 2e-12 AT3G54610 718 / 0.0 HISTONE ACETYLTRANSFERASE 1, general control non-repressible 5, BIG TOP, histone acetyltransferase of the GNAT family 1 (.1) Potri.001G355300 [exp] 66 / 5e-11 AT5G46550 201 / 5e-58 DNA-binding bromodomain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00439 [flax] [poplar] Bromodomain Bromodomain
Representative CDS sequence Show only first row Show all	>Lus10030739 pacid=23155247 polypeptide=Lus10030739 locus=Lus10030739.g ID=Lus10030739.BGIv1.0 annot-version=v1.0 ATGGGTAAGGTAGCAGCAAAGGCAGAGGCAGCAATGACGAAGAAGCGCAAGAAAAAGGGACGCCCTTCTCTGTTAGACCTCCAGAAGCGAGCTATCAAGC AGGAATTGCAGCAACAACAGCAGCGCCAGAGTTCCAAGAACCATCATCATCAAACCCCTCCTCTCCGCCAAAACCCTAATTCCCTCAATTCCTCCGCCCG CCGATCTGCTCGCCGGAACGGCGAGGAGGAGGAGGAGGAGGAAGAAGACGACGACGAGCGCAAGGAGAAGAAGCTCAAACCCTTGCTAGGTCTCAATTCT CGGGATTCGAATCCCTTGATTCGTTCCAATTCTTCTGCTTCCAATTCTCACGGCTCCGGTTCCAATGCCGATGTTGATGTCAAGAACCGCCAGATCGGGG GGGGACGTCTCCGGTTCCCCCCCATTGGGTGGTTATCGGAAGAGGCTGGTCCCACGACACCTTTGCCAGACAAAAAGTTGTTGCTCTTCATTCTTGACAG ACTTCAAAAAAAGGATACTTATGGAGTTTTCTCTGACCCTGTGGATCCAGAAGAGTTACCTGATTATCACGATATCATTCTGCATCCAATGGATTTTTCT ACCGTGAGGAGAAAGCTAGATGCCAAGGAGTATCTCAACTTGGAACAATTTGAGAGAGATGTTTTCCTGATTTGTTCAAATGCGATGCAATACAACCCTC CAGATACTGTGTACTTTCGACAGGCGCGTTCCATACAAGAGCTTGCAAAGAAGGACTTTGAGAACTTGAGACAAGATAGTGATGATGGTGATGACGATGA AGATGGTGAGCCGGAGCCCAAAGTTGAAAAGGTTGAAAAAGTTGTGAGGAGGGGTAGACCGCCTGGAAGTGGGAAGTCGAAGAAATCACTCGAGAAGTCT CCACTTGACCGTGTTATGGTTGAATTTAACTCCGACACAACGCTGGCTACTGCAGGGGACAACTCTAATGGCTCCAACGGTTACAATTTCAGAAAAACAA CATTGTTCAAACCACCTGTTGATATGTCGGGAAGAAACTCGCATGGTTCACATAATGGTGACAATTACAGTTCCTGGTTGTCTGAATGGGAAAATGAATT TCCAGCTTCTGTGCTAAAGGCTGTAATGAAACATGTGAAGAAGCCAGCTACTTTAGATGAGAACAGGCGAGATTCATATAACCCTCCCACGGCATCTACA AGCGAATCATTTGTCTTGAATCCATTCGAAGGAGAATTGAAGCAACTTGTAGCGGTAGGTTTGAGTGCAGAGTATGGTTATGCAAGGAGCGTAGCTCGAT TTGCGGCAGATCTAGGTCCAACTGCTTGGACAATGGCCTCAAAAAGAATTCAGAGGGTATTGCCAACGGGAGTTGAATTTGGTCCTGGATGGGTAGGAGA AAATGATTTGGTCCCGGGGAGCCATTTTCTATTTTCATCCAAGGACAAAAACCCTTCGGCTAACTCTGCACCTGGTGATCCTTCAAACAGTCATCAACCT TCCACAAGCACCGCAAACAATCATCATACGCAGAATATCGAAAACGCGATGCCGGGTGTTGGTGGCTCAGGTACTCTAGGTGGATTAGCTTCCTCGAATG CTGTGTCACCGATGGTTAGTACACCCCACCAGCCTGTTGGCTTGGTTCCGAGTTGTTCCAATGCGGGGTTTGGTCCAATACAGCAAGGGCAGGACTCAGA AACTAGCAATAAGAGCAAGCAAGAAAATGTGAGCCCTGAGAAAGATTCGTCAGGTCCGGGGAGCAGAACTGGGAACCAAGCTATAACGCCTAGCAATAAA CATCCGCAAGAGGCCATCCAATTCCCAACAGACTTGAACGTAGGGTTCTTATCGCCAAGTTCGCCTACTTCCGGGATTCCAATTGGGTCACCACAGCAGC CAGATTTAGCATTACAGCTTTGA
AA sequence Show only first row Show all	>Lus10030739 pacid=23155247 polypeptide=Lus10030739 locus=Lus10030739.g ID=Lus10030739.BGIv1.0 annot-version=v1.0 MGKVAAKAEAAMTKKRKKKGRPSLLDLQKRAIKQELQQQQQRQSSKNHHHQTPPLRQNPNSLNSSARRSARRNGEEEEEEEEDDDERKEKKLKPLLGLNS RDSNPLIRSNSSASNSHGSGSNADVDVKNRQIGGGRLRFPPIGWLSEEAGPTTPLPDKKLLLFILDRLQKKDTYGVFSDPVDPEELPDYHDIILHPMDFS TVRRKLDAKEYLNLEQFERDVFLICSNAMQYNPPDTVYFRQARSIQELAKKDFENLRQDSDDGDDDEDGEPEPKVEKVEKVVRRGRPPGSGKSKKSLEKS PLDRVMVEFNSDTTLATAGDNSNGSNGYNFRKTTLFKPPVDMSGRNSHGSHNGDNYSSWLSEWENEFPASVLKAVMKHVKKPATLDENRRDSYNPPTAST SESFVLNPFEGELKQLVAVGLSAEYGYARSVARFAADLGPTAWTMASKRIQRVLPTGVEFGPGWVGENDLVPGSHFLFSSKDKNPSANSAPGDPSNSHQP STSTANNHHTQNIENAMPGVGGSGTLGGLASSNAVSPMVSTPHQPVGLVPSCSNAGFGPIQQGQDSETSNKSKQENVSPEKDSSGPGSRTGNQAITPSNK HPQEAIQFPTDLNVGFLSPSSPTSGIPIGSPQQPDLALQL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20670			DNA-binding bromodomain-contai...		Lus10030739 [exp]	0	1
AT1G20670			DNA-binding bromodomain-contai...		Lus10013220 [exp]	3.7	0.7586
AT4G11860			Protein of unknown function (D...		Lus10006717 [exp]	8.1	0.7861
AT1G75660		AtXRN3, XRN3	5'-3' exoribonuclease 3 (.1)		Lus10024327 [exp]	12.0	0.7881
AT1G30970	C2H2ZnF	SUF4	suppressor of FRIGIDA4, zinc f...		Lus10038373 [exp]	12.2	0.7662
AT1G30970	C2H2ZnF	SUF4	suppressor of FRIGIDA4, zinc f...		Lus10036234 [exp]	13.4	0.7665
AT3G63460		EMB2221	transducin family protein / WD...		Lus10019752 [exp]	22.6	0.7816
AT3G28430			unknown protein		Lus10018448 [exp]	24.0	0.7204
AT3G58580			DNAse I-like superfamily prote...		Lus10015981 [exp]	32.0	0.7429
AT1G54490		ATXRN4, XRN4, E...	ETHYLENE INSENSITIVE 5, ACC IN...		Lus10004119 [exp]	35.5	0.7440
AT2G40730		CTEXP	cytoplasmic tRNA export protei...		Lus10029025 [exp]	37.2	0.7316

Compare expression of checked genes

Lus10030739 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.