Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37420 290 / 4e-91 Domain of unknown function (DUF23) (.1) AT1G27200 160 / 7e-43 Domain of unknown function (DUF23) (.1) AT3G27330 154 / 5e-40 zinc finger (C3HC4-type RING finger) family protein (.1) AT5G40720 146 / 9e-38 Domain of unknown function (DUF23) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013221 [exp] 598 / 0 AT4G37420 469 / 9e-160 Domain of unknown function (DUF23) (.1) Lus10016022 [exp] 451 / 1e-154 AT4G37420 488 / 6e-168 Domain of unknown function (DUF23) (.1) Lus10012255 [exp] 384 / 9e-128 AT4G37420 437 / 2e-147 Domain of unknown function (DUF23) (.1) Lus10010731 [exp] 159 / 4e-42 AT1G27200 555 / 0.0 Domain of unknown function (DUF23) (.1) Lus10036676 [exp] 158 / 4e-42 AT1G27200 543 / 0.0 Domain of unknown function (DUF23) (.1) Lus10032118 [exp] 139 / 3e-35 AT3G27330 570 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10013291 [exp] 137 / 1e-34 AT1G27200 577 / 0.0 Domain of unknown function (DUF23) (.1) Lus10030815 [exp] 137 / 2e-34 AT1G27200 577 / 0.0 Domain of unknown function (DUF23) (.1) Lus10014568 [exp] 135 / 6e-34 AT3G27330 573 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G252100 [exp] 365 / 5e-120 AT4G37420 540 / 0.0 Domain of unknown function (DUF23) (.1) Potri.001G336766 [exp] 204 / 4e-59 AT3G27330 637 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.010G039000 [exp] 156 / 2e-41 AT1G27200 582 / 0.0 Domain of unknown function (DUF23) (.1) Potri.008G192000 [exp] 144 / 5e-37 AT1G27200 585 / 0.0 Domain of unknown function (DUF23) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01697 [flax] [poplar] Glyco_transf_92 Glycosyltransferase family 92
Representative CDS sequence Show only first row Show all	>Lus10030740 pacid=23155319 polypeptide=Lus10030740 locus=Lus10030740.g ID=Lus10030740.BGIv1.0 annot-version=v1.0 ATGAAGTCTCCTCCTCCTCCGCTCTTCCCAATTCCCATCCATCCCGCCGCCGTCAAACCCTTTCCCCTCCTCCAAACGACCCGTCGTCTCGCCTCCGCTC TCCTCCTCTCCATCATCATCTTCCTCTCCGTTTCCATCTTCCTCTCACTTTCACCCTTCTCTTCCTCTCCCCTTCAATCCTTCTACAGCGGCTGCAGTCG TACCACCACCGCCGCCGTCGAATTCCCAATCGACTCTGTTTCCGTTCTGCTCTCGGACTGGGAGGTTCTCGTGATCGTGTCACAACAACACACTCAATTT CTGCCGTCGGCGGAGTCGATTCAATCACGGGAAGAAAAAGAAGAAGAAGCATTCATCTGCGTTTATCCTGACAACGAAACTTCTCCGGCGAGATTCTCCG GTGCTCTGCCGTCGACGGATCAGCTGGTGTTCAAGTGTTTACTGCCGGAGACGCTCCGACGGAAGAAGGAATTGAGATCATCCCCGGTACTGGTCAGGAA ATCGTCGGGGGAGCTGTCTGGATTTTCCTTTCCGGAGAAATCGCTGCTGAGGTGGACATTCCTCGCGTACGAATCTTTCTCCACCGAGAACGACGTCGTG CTGTTCGCTAAAGGCGTCAACAGTAAGCAAGCAGTCAACCGACCTCCTCACAAGTTGAGGTGCGTGTTCACCAATCCTGATGACGACGATGATGATTCTT CCTTGACAATCGCCACCGCTGTCTCCAGCTCCGATCAGGAGGTTTTCCGGTGTGGCCATCCGGATTTGACTGGCTTCGGTGGGTCAAACGCAACGAGAGT CAAAATCTCTCTGGAGATATTATCCAGCGATGGTGGAACGAATGTTCGAGTTCCTTCGGTGGCGTACTACTCTCCGTGGCGCAGGATAGAGGTTCCGAGG CGGAAGTTTACGATGTGCGCCGCGACGATGGTGTACAACTCCGCCAAGTTCCTGCGGGAGTGGGTGGTTTACCACTCCGGGATCGGCGTTGATAAATTCT TCCTCTACGACAACGATAGCGACGACAATCTACAAACCGTCGTCGGATCGTTGAATTCAGAAGGATACAACATCGAAACAGTGCCGTGGATTTGGCCGAA GACTCAGGAGGCAGGATTCTCTCACTCCGCGGTTTACGCTAAGGAATCGTGCGATTGGATGATGTACGTCGACGTGGACGAGTTCGTATTCTCGCCGCGG TGGAGCTCCGCCGCGAAGCCGTCGAATCGGATGTTGAAATCCCTCGGTTCGACTCATGTGAACCTGGCGACGGCGGTGGTTAATCACTACAAGTATCAGG CGTGGTCGGAGTTCAAGTTGAAGTTTCGGAGGAGAGTGTCGGCGTACGTGGTGGATTGGAAGACGGCGGTGAATATGGGGTCGAAGGACAGGGCGCCGGG GTTAGGGGCCATTGCGGTGAAGCCGGAGGATTGGGAGCGGCGATTCTGTGAAGTGAAGGACGAGCGGTTGAAGGATGTGGCGCGGAGATGGTTCGGTGGC GGCAAGAACAGATTGGCGTCCGCGTAG
AA sequence Show only first row Show all	>Lus10030740 pacid=23155319 polypeptide=Lus10030740 locus=Lus10030740.g ID=Lus10030740.BGIv1.0 annot-version=v1.0 MKSPPPPLFPIPIHPAAVKPFPLLQTTRRLASALLLSIIIFLSVSIFLSLSPFSSSPLQSFYSGCSRTTTAAVEFPIDSVSVLLSDWEVLVIVSQQHTQF LPSAESIQSREEKEEEAFICVYPDNETSPARFSGALPSTDQLVFKCLLPETLRRKKELRSSPVLVRKSSGELSGFSFPEKSLLRWTFLAYESFSTENDVV LFAKGVNSKQAVNRPPHKLRCVFTNPDDDDDDSSLTIATAVSSSDQEVFRCGHPDLTGFGGSNATRVKISLEILSSDGGTNVRVPSVAYYSPWRRIEVPR RKFTMCAATMVYNSAKFLREWVVYHSGIGVDKFFLYDNDSDDNLQTVVGSLNSEGYNIETVPWIWPKTQEAGFSHSAVYAKESCDWMMYVDVDEFVFSPR WSSAAKPSNRMLKSLGSTHVNLATAVVNHYKYQAWSEFKLKFRRRVSAYVVDWKTAVNMGSKDRAPGLGAIAVKPEDWERRFCEVKDERLKDVARRWFGG GKNRLASA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37420			Domain of unknown function (DU...		Lus10030740 [exp]	0	1
AT2G23450			Protein kinase superfamily pro...		Lus10000741 [exp]	1.7	0.8657
AT2G19130			S-locus lectin protein kinase ...		Lus10032944 [exp]	3.5	0.8430
AT2G23450			Protein kinase superfamily pro...		Lus10019657 [exp]	5.3	0.8540
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Lus10007632 [exp]	5.3	0.8072
AT2G26530		AR781	Protein of unknown function (D...		Lus10032766 [exp]	7.1	0.8276
AT4G39830			Cupredoxin superfamily protein...		Lus10022504 [exp]	7.2	0.8311
					Lus10005523 [exp]	7.7	0.8151
AT1G68360	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Lus10029204 [exp]	8.5	0.8025
					Lus10023285 [exp]	8.5	0.8000
AT3G59080			Eukaryotic aspartyl protease f...		Lus10020759 [exp]	11.4	0.8014

Compare expression of checked genes

Lus10030740 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.