Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20650 516 / 0 ASG5 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) AT1G76370 482 / 6e-171 Protein kinase superfamily protein (.1) AT5G18610 451 / 6e-157 Protein kinase superfamily protein (.1.2) AT5G02800 441 / 7e-155 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1) AT5G13160 429 / 5e-149 PBS1 avrPphB susceptible 1, Protein kinase superfamily protein (.1) AT3G07070 413 / 3e-143 Protein kinase superfamily protein (.1) AT3G24790 404 / 2e-140 Protein kinase superfamily protein (.1) AT1G07870 395 / 5e-136 Protein kinase superfamily protein (.1.2) AT4G13190 390 / 2e-134 Protein kinase superfamily protein (.1) AT3G20530 387 / 2e-133 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016021 [exp] 580 / 0 AT1G20650 516 / 0.0 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) Lus10012249 [exp] 535 / 7e-178 AT1G20720 1074 / 0.0 RAD3-like DNA-binding helicase protein (.1) Lus10013222 [exp] 463 / 3e-165 AT1G20650 322 / 7e-110 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) Lus10012814 [exp] 450 / 2e-156 AT5G18610 807 / 0.0 Protein kinase superfamily protein (.1.2) Lus10033966 [exp] 450 / 3e-156 AT5G18610 805 / 0.0 Protein kinase superfamily protein (.1.2) Lus10015756 [exp] 448 / 4e-156 AT5G13160 732 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Lus10041426 [exp] 434 / 5e-152 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Lus10040350 [exp] 426 / 1e-148 AT5G18610 569 / 0.0 Protein kinase superfamily protein (.1.2) Lus10023473 [exp] 426 / 2e-148 AT5G18610 568 / 0.0 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G009300 [exp] 541 / 0 AT1G20650 548 / 0.0 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) Potri.005G252000 [exp] 524 / 0 AT1G20650 531 / 0.0 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) Potri.003G166900 [exp] 451 / 2e-157 AT5G13160 745 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.010G215100 [exp] 443 / 9e-156 AT5G18610 595 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G205700 [exp] 448 / 2e-155 AT5G18610 783 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G046500 [exp] 440 / 2e-154 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G021500 [exp] 444 / 4e-154 AT5G18610 779 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G060800 [exp] 440 / 4e-153 AT5G13160 714 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.006G133300 [exp] 432 / 1e-150 AT5G02800 566 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1) Potri.001G421400 [exp] 410 / 1e-142 AT3G20530 587 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10030741 pacid=23155266 polypeptide=Lus10030741 locus=Lus10030741.g ID=Lus10030741.BGIv1.0 annot-version=v1.0 ATGAACTGCTTCTCTTGCATTAATCCTCGCCGCAAGGGAGTCAAGATCGACATTGAGAATGTTCCTGGCTCTTCCAACCACCGTAATTCTGCCGCCGATT CATCTGTTACCGGGAAGGGGAAGTGTATGGAAGTTACGCCGGCGAAATGCCAAGGCGCTTGTAGTTTCTCGTTCTTGGAGCTGGCGAATGCTACTCAGAA TTTCAGGGATGCAAATCTGATTGGAGAAGGGGGTTTTGGTAAGGTTTACAAAGGCCGGCTGCAAACAGGCCAGATTGTTGCGGTGAAGCAGCTGAACCAG GAAGGAATGCAGGGTAATCAGGAGTTCATCGTTGAGGTTCTAATGTTGAGCCTCTTGCACCATCCGAATCTAGTTACTTTGACTGGCTACTGCACTGCCG GCGATCAGAGAATGCTGGTTTATGAGTACATGCCTATGGGAAGCTTGGAAAATCATCTCTATGATGTGGATCCTGATAAGGAGCCACTTGGTTGGAGCAC GAGAATGAAGATCGCTGTTGATGCAGCTAGAGGGCTCGAGTACCTGCATTGCAAAACAAGTCCGCCTATTATCTACCGTGACCTAAAATCAGCAAACATC TTGCTGGACGATGATTTCCACGCCAAGCTATCTGATTTCGGACTTGCCAAACTGGGACCTGTTGGTGATAATACCCATGTTTCGACCAGAGTTATGGGAA CATACGGCTACTGTGCACCGGAATATGCCATGAGCGGGAAACTTACCCTTAAATCTGATATCTATAGCTTTGGAGTTGTCCTCTTGGAGCTTATTACTGG AATGAAGGCAATGGATTCTAATCGAAGGCACGGGGAGAAGAATCTAGTAGCTTGGTCTCGGCCGTTTATGAAAGACCAGAAGACGTACTCTCAAATGGCG GACCCACAGCTGCAGGGGCAGTACTCTCGTCGGTGTTTGAACTATGCGATTGCCATAACGAAAATGTGCCTGCATGAGGAAGCACATTTCCGGCCTATGA TCGGCGATATAGTGGTCGCCTTGGAGTACTTGGAAGCACAGAGTTGCAGCGCTGCAGCAGCAGAAGCCAAGGCAAAGAAGTCGAACGAAAATTCGAAGCA GCACTTCTCGAAGTCGGTGAGAGACGCTTTTATTCAGGAAACAGATTCCAGCAGCGCTGCTGGTTTCTAG
AA sequence Show only first row Show all	>Lus10030741 pacid=23155266 polypeptide=Lus10030741 locus=Lus10030741.g ID=Lus10030741.BGIv1.0 annot-version=v1.0 MNCFSCINPRRKGVKIDIENVPGSSNHRNSAADSSVTGKGKCMEVTPAKCQGACSFSFLELANATQNFRDANLIGEGGFGKVYKGRLQTGQIVAVKQLNQ EGMQGNQEFIVEVLMLSLLHHPNLVTLTGYCTAGDQRMLVYEYMPMGSLENHLYDVDPDKEPLGWSTRMKIAVDAARGLEYLHCKTSPPIIYRDLKSANI LLDDDFHAKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMSGKLTLKSDIYSFGVVLLELITGMKAMDSNRRHGEKNLVAWSRPFMKDQKTYSQMA DPQLQGQYSRRCLNYAIAITKMCLHEEAHFRPMIGDIVVALEYLEAQSCSAAAAEAKAKKSNENSKQHFSKSVRDAFIQETDSSSAAGF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20650		ASG5	ALTERED SEED GERMINATION 5, Pr...		Lus10030741 [exp]	0	1
AT2G24830	C3HZnF		zinc finger (CCCH-type) family...		Lus10026901 [exp]	12.2	0.7648
AT3G11500			Small nuclear ribonucleoprotei...		Lus10017019 [exp]	13.4	0.7943
AT1G50170		ATSIRB	sirohydrochlorin ferrochelatas...		Lus10022245 [exp]	21.1	0.6755
AT3G30380			alpha/beta-Hydrolases superfam...		Lus10035148 [exp]	29.2	0.7059
AT2G45860			unknown protein		Lus10037857 [exp]	29.5	0.7498
AT4G30400			RING/U-box superfamily protein...		Lus10015502 [exp]	41.0	0.6721
AT5G56670			Ribosomal protein S30 family p...		Lus10017473 [exp]	42.1	0.7709
AT2G38130		ATMAK3	Acyl-CoA N-acyltransferases (N...		Lus10041514 [exp]	44.1	0.7609
AT1G32210		ATDAD1	DEFENDER AGAINST APOPTOTIC DEA...		Lus10012136 [exp]	45.5	0.7109
AT4G02980		ABP1	endoplasmic reticulum auxin bi...		Lus10029633 [exp]	47.5	0.7485

Compare expression of checked genes

Lus10030741 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.