Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76360 312 / 3e-103 Protein kinase superfamily protein (.1) AT2G17220 303 / 8e-101 Kin3 kinase 3, Protein kinase superfamily protein (.1.2) AT2G28930 303 / 1e-100 APK1B protein kinase 1B (.1.2.3) AT1G07570 295 / 1e-97 APK1A Protein kinase superfamily protein (.1.2.3) AT5G02290 291 / 3e-96 NAK Protein kinase superfamily protein (.1.2) AT3G28690 284 / 1e-93 Protein kinase superfamily protein (.1.2.3) AT2G02800 285 / 3e-93 Kin2, APK2B protein kinase 2B (.1.2) AT2G39660 282 / 1e-92 BIK1 botrytis-induced kinase1 (.1) AT5G15080 285 / 2e-92 Protein kinase superfamily protein (.1) AT3G55450 281 / 2e-92 PBL1 PBS1-like 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012256 [exp] 363 / 3e-124 AT1G76360 499 / 1e-175 Protein kinase superfamily protein (.1) Lus10016020 [exp] 358 / 4e-122 AT1G76360 493 / 2e-173 Protein kinase superfamily protein (.1) Lus10030743 [exp] 349 / 1e-118 AT1G76360 483 / 2e-169 Protein kinase superfamily protein (.1) Lus10023794 [exp] 311 / 1e-104 AT5G02290 543 / 0.0 Protein kinase superfamily protein (.1.2) Lus10024512 [exp] 311 / 1e-103 AT4G35600 483 / 4e-170 kinase 4, CONNEXIN 32, CAST AWAY, Protein kinase superfamily protein (.1.2) Lus10013223 [exp] 305 / 6e-103 AT1G76360 400 / 8e-139 Protein kinase superfamily protein (.1) Lus10024391 [exp] 306 / 8e-102 AT5G02290 563 / 0.0 Protein kinase superfamily protein (.1.2) Lus10010835 [exp] 305 / 2e-101 AT5G02290 561 / 0.0 Protein kinase superfamily protein (.1.2) Lus10002697 [exp] 304 / 3e-101 AT1G07570 543 / 0.0 Protein kinase superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G251900 [exp] 344 / 2e-116 AT1G76360 483 / 1e-168 Protein kinase superfamily protein (.1) Potri.002G009400 [exp] 317 / 2e-105 AT1G76360 461 / 1e-159 Protein kinase superfamily protein (.1) Potri.005G100900 [exp] 312 / 8e-104 AT2G17220 462 / 6e-162 kinase 3, Protein kinase superfamily protein (.1.2) Potri.009G031300 [exp] 308 / 1e-102 AT2G28930 603 / 0.0 protein kinase 1B (.1.2.3) Potri.009G167400 [exp] 308 / 2e-102 AT2G17220 537 / 0.0 kinase 3, Protein kinase superfamily protein (.1.2) Potri.016G094300 [exp] 306 / 6e-102 AT1G07570 540 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.007G062700 [exp] 306 / 1e-101 AT2G17220 469 / 2e-164 kinase 3, Protein kinase superfamily protein (.1.2) Potri.001G240400 [exp] 301 / 3e-100 AT1G07570 590 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.004G206100 [exp] 301 / 6e-100 AT2G17220 539 / 0.0 kinase 3, Protein kinase superfamily protein (.1.2) Potri.010G203400 [exp] 298 / 9e-99 AT2G28930 540 / 0.0 protein kinase 1B (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10030742 pacid=23155204 polypeptide=Lus10030742 locus=Lus10030742.g ID=Lus10030742.BGIv1.0 annot-version=v1.0 ATGGGAAACTGCATCGGAAGCAGAGGCCGCGGCGACGGTGTAGAGAAGGTTGACGGAGGCAGCGGGGAAAAGGGTGACTGTATTGGGGTAACGCCGGCAT CGGAAGGCATAAAAGTGTTCAAGTTTGCAGATTTGAAGATGGCGACGAGGAATTTCAGGCCGGATATGGTGTTGGGAGAAGGCTTTTCAAGCGTGGTGTC CGAAGGGTGGGTCGACGGTGAGACTTTGGCTCCTTGCAAGAAAGGATGCGGCATTCCCATCGCTGTCAAGAGGATCATCGATCTCGACAGCTCTCGTGTC CCCGAGGAATGGCAGGCAGAAGTGAAGTTTCTGGGCGAAAGATCACACCCAAATCTGGTGAAACTGTACGGTTATTGCTGGGAAGAGAATCAACTCTTCC TCGTCTATGAGTGTATGCAGGGTGGGACCTTGGATAATTGCCTTTTCAGAAGGGGTTCGGAACCATTGTCATGGGAGATTCGCATGAAGATCGCCATTGA TGCCGCCAGAGCCCTGGCTTTCCTCCACTCCTTAGAGGGAGGTGCCGCCGCAGACCACGATTTTAAGACCTCAAGTATTCTCTTGGATAAGAACTTCAAC GCCAAGCTTTTAGGCTCGGGACTAGCAGAATTCAAGTCGACAACGGTGACATCACCTATGTCTCCTCCTCTCTGGAGTCTCAACTGTACATATGGGTATG CAGCGCCAGAGTACGTGGCCGCCGGCTATTTGTCTGACAAGTCGAACGTCTACGGGTTCGGCGTCGTCCTGGCGGAATTACTAACTGGAGTACGCGCCGT CGATCGAAATCGGCCGGCCGGGCAGAAAATGCTTGTGGAATGGGTTAAGCTTCATTTTTCCAAAAGGAGGAATCTTAAGAAGATTATTGACTCTAGACTT GGAGACCAGTACCCGTTAAATGCTGCAGTAAAAGTGTCCCGACTTGTACTTCAGTGCTTGGGAAACGATCCCAAAACCAGGCCTTCCATGGAGGAAGTCT TGCAGGCTTTACTGAAGATAAGAGGAATATCCCAAACTGCAGGGGAAACCTAG
AA sequence Show only first row Show all	>Lus10030742 pacid=23155204 polypeptide=Lus10030742 locus=Lus10030742.g ID=Lus10030742.BGIv1.0 annot-version=v1.0 MGNCIGSRGRGDGVEKVDGGSGEKGDCIGVTPASEGIKVFKFADLKMATRNFRPDMVLGEGFSSVVSEGWVDGETLAPCKKGCGIPIAVKRIIDLDSSRV PEEWQAEVKFLGERSHPNLVKLYGYCWEENQLFLVYECMQGGTLDNCLFRRGSEPLSWEIRMKIAIDAARALAFLHSLEGGAAADHDFKTSSILLDKNFN AKLLGSGLAEFKSTTVTSPMSPPLWSLNCTYGYAAPEYVAAGYLSDKSNVYGFGVVLAELLTGVRAVDRNRPAGQKMLVEWVKLHFSKRRNLKKIIDSRL GDQYPLNAAVKVSRLVLQCLGNDPKTRPSMEEVLQALLKIRGISQTAGET

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76360			Protein kinase superfamily pro...		Lus10030742 [exp]	0	1
					Lus10042751 [exp]	1.0	0.9232
AT2G45760		BAL, BAP2	BON ASSOCIATION PROTEIN 1-LIKE...		Lus10024505 [exp]	1.7	0.9092
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Lus10015354 [exp]	2.4	0.9210
AT3G57120			Protein kinase superfamily pro...		Lus10029721 [exp]	4.0	0.9001
AT1G78410			VQ motif-containing protein (....		Lus10038502 [exp]	7.7	0.8891
AT5G05190			Protein of unknown function (D...		Lus10029013 [exp]	10.0	0.8503
AT1G01490			Heavy metal transport/detoxifi...		Lus10027522 [exp]	10.2	0.8737
AT4G27220			NB-ARC domain-containing disea...		Lus10008516 [exp]	10.4	0.8522
AT2G28500	AS2	LBD11	LOB domain-containing protein ...		Lus10036130 [exp]	10.5	0.8900
AT1G34050			Ankyrin repeat family protein ...		Lus10024844 [exp]	10.6	0.8783

Compare expression of checked genes

Lus10030742 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.