Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76360 464 / 5e-162 Protein kinase superfamily protein (.1) AT2G17220 409 / 5e-141 Kin3 kinase 3, Protein kinase superfamily protein (.1.2) AT1G07570 405 / 6e-140 APK1A Protein kinase superfamily protein (.1.2.3) AT2G28930 401 / 6e-138 APK1B protein kinase 1B (.1.2.3) AT4G35600 395 / 9e-136 Kin4, CX32, CST, CONNEXIN 32, CONNEXIN32 kinase 4, CONNEXIN 32, CAST AWAY, Protein kinase superfamily protein (.1.2) AT5G02290 391 / 2e-134 NAK Protein kinase superfamily protein (.1.2) AT2G02800 375 / 1e-127 Kin2, APK2B protein kinase 2B (.1.2) AT1G26970 370 / 5e-126 Protein kinase superfamily protein (.1) AT1G14370 370 / 8e-126 Kin1, PBL2, APK2A PBS1-like 2, kinase 1, protein kinase 2A (.1) AT5G15080 372 / 1e-125 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013223 [exp] 555 / 0 AT1G76360 400 / 8e-139 Protein kinase superfamily protein (.1) Lus10012256 [exp] 518 / 0 AT1G76360 499 / 1e-175 Protein kinase superfamily protein (.1) Lus10016020 [exp] 513 / 0 AT1G76360 493 / 2e-173 Protein kinase superfamily protein (.1) Lus10024512 [exp] 432 / 1e-149 AT4G35600 483 / 4e-170 kinase 4, CONNEXIN 32, CAST AWAY, Protein kinase superfamily protein (.1.2) Lus10008015 [exp] 417 / 5e-144 AT4G35600 464 / 2e-162 kinase 4, CONNEXIN 32, CAST AWAY, Protein kinase superfamily protein (.1.2) Lus10001392 [exp] 408 / 1e-140 AT2G17220 537 / 0.0 kinase 3, Protein kinase superfamily protein (.1.2) Lus10023000 [exp] 403 / 1e-138 AT2G17220 538 / 0.0 kinase 3, Protein kinase superfamily protein (.1.2) Lus10024391 [exp] 400 / 6e-138 AT5G02290 563 / 0.0 Protein kinase superfamily protein (.1.2) Lus10010835 [exp] 400 / 7e-138 AT5G02290 561 / 0.0 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G251900 [exp] 496 / 5e-175 AT1G76360 483 / 1e-168 Protein kinase superfamily protein (.1) Potri.002G009400 [exp] 474 / 7e-166 AT1G76360 461 / 1e-159 Protein kinase superfamily protein (.1) Potri.007G062700 [exp] 427 / 5e-148 AT2G17220 469 / 2e-164 kinase 3, Protein kinase superfamily protein (.1.2) Potri.005G100900 [exp] 427 / 7e-148 AT2G17220 462 / 6e-162 kinase 3, Protein kinase superfamily protein (.1.2) Potri.009G167400 [exp] 402 / 3e-138 AT2G17220 537 / 0.0 kinase 3, Protein kinase superfamily protein (.1.2) Potri.004G206100 [exp] 401 / 8e-138 AT2G17220 539 / 0.0 kinase 3, Protein kinase superfamily protein (.1.2) Potri.016G094300 [exp] 397 / 1e-136 AT1G07570 540 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.008G056400 [exp] 392 / 1e-134 AT1G07570 528 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.010G203400 [exp] 392 / 2e-134 AT2G28930 540 / 0.0 protein kinase 1B (.1.2.3) Potri.009G031300 [exp] 392 / 2e-134 AT2G28930 603 / 0.0 protein kinase 1B (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10030743 pacid=23155178 polypeptide=Lus10030743 locus=Lus10030743.g ID=Lus10030743.BGIv1.0 annot-version=v1.0 ATGGGAAACAACTGCATCGGCGGTAGTACTCCGGTGAACCACTACCAAACACCGACCACCTCCACCTCTCCAGCTGGTTTTCCGCCCACCCCAAGAAAAC TAATCGGAGGAGGAGGAGGAGAAAGATCAAGCGACGGCGTCGTTCAGCGCAGCAAGTACACAGCTGAAATGGCGCCGTCGTCGGATAATAAGTATAAGGC GGCTACAGCTGCTCCTAGAATAAAGATATTCAGACTTGTGGACTTGAAGAGCGCGACGAGGAATTTCAGGCCGGACACGGTGTTAGGGGAAGGCGGTTTC GGAACGGTGTTCAAAGGATGGATCGACGAGCACACTTTGGCTCCGTCGAAAGCCGGGGTCGGGATGCCCGTCGCGGTCAAGCGCGCTAATCAGGACAGCT CTCAAGGCCTCGAAGAGTGGCAGGCGGAAGTGAAGTTTCTGGGCAAATTCGGACACCAAAATCTGGTGAAATTGTTGGGTTACTGTTCGGAAGACAATCA GTTCTTGCTGGTCTACGAGTACATGCCCAAAGGCAGTTTGGAAAGTCACCTTTTCAGAAAGGGTGCAGAGCCATTGTCGTGGGAGATCCGGATGAGAATC GCAATTGGTGCGGCCCAAGGCTTGGCGTTCCTCCACTCCTCCGAGAAAAGTGTCATCTACCGTGACTTCAAGGCTTCCAACATTCTTCTCGATAGGGACT TCAATGCCAAGCTTTCGGACTTCGGACTGGCCAAATTCGGCCCGATAAACGGCCAGTCCCACGTCACCACTCGAATCATGGGGACCCACGGGTACGCGGC GCCGGAGTACGTGGCGACTGGCCACCTGTATGTAAAATCCGACGTGTACGGATTCGGGGTGGTCTTACTCGAAATACTTACGGGCCTACGGGCACTCGAC ACGAATCGTCCCAGCGGAGAGTATAGGCTAGTGGAATGGGCCAAGGCTTCCCTGTCCAGCAAGAAGAAGCTCAAGAAGATTATGGATCCAAGGCTTCAAG ACCAGTATCCGTTAAACGCCGCGTTGCAATCGGCGCAGCTTATACTCAAGTGCTTGGAGAACGATCCGAAGATTAGGCCTTCCATGGAGGAAGTTTTGGG GACATTGACCAAGATCAAAGAGATCCAGCATCATACCAAAGAGGTGAAATCTAGCAGCAGAGGTGCTCACAGTCACAGCAGTGATGAGATTCATCATCAG CAGAGAAGTCACAGAAGTGGAAATGGGCATAGAACTAGGCATCATTCGAGTAGATAG
AA sequence Show only first row Show all	>Lus10030743 pacid=23155178 polypeptide=Lus10030743 locus=Lus10030743.g ID=Lus10030743.BGIv1.0 annot-version=v1.0 MGNNCIGGSTPVNHYQTPTTSTSPAGFPPTPRKLIGGGGGERSSDGVVQRSKYTAEMAPSSDNKYKAATAAPRIKIFRLVDLKSATRNFRPDTVLGEGGF GTVFKGWIDEHTLAPSKAGVGMPVAVKRANQDSSQGLEEWQAEVKFLGKFGHQNLVKLLGYCSEDNQFLLVYEYMPKGSLESHLFRKGAEPLSWEIRMRI AIGAAQGLAFLHSSEKSVIYRDFKASNILLDRDFNAKLSDFGLAKFGPINGQSHVTTRIMGTHGYAAPEYVATGHLYVKSDVYGFGVVLLEILTGLRALD TNRPSGEYRLVEWAKASLSSKKKLKKIMDPRLQDQYPLNAALQSAQLILKCLENDPKIRPSMEEVLGTLTKIKEIQHHTKEVKSSSRGAHSHSSDEIHHQ QRSHRSGNGHRTRHHSSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76360			Protein kinase superfamily pro...		Lus10030743 [exp]	0	1
AT1G68940			Armadillo/beta-catenin-like re...		Lus10013050 [exp]	7.9	0.9181
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10022195 [exp]	8.3	0.9169
AT1G18010			Major facilitator superfamily ...		Lus10006288 [exp]	10.8	0.9125
AT4G35160			O-methyltransferase family pro...		Lus10013945 [exp]	16.2	0.9129
AT3G53810			Concanavalin A-like lectin pro...		Lus10003224 [exp]	16.3	0.9170
AT3G09760			RING/U-box superfamily protein...		Lus10019931 [exp]	19.7	0.8977
AT1G30270		PKS17, ATCIPK23...	SNF1-RELATED PROTEIN KINASE 3....		Lus10042816 [exp]	21.2	0.9151
AT3G51630		ATWNK5, ZIK1, W...	with no lysine (K) kinase 5 (....		Lus10014165 [exp]	23.1	0.9004
AT4G27290			S-locus lectin protein kinase ...		Lus10016871 [exp]	24.9	0.9158
AT2G19130			S-locus lectin protein kinase ...		Lus10042266 [exp]	25.9	0.9157

Compare expression of checked genes

Lus10030743 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.