Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20640 415 / 5e-134 NLP4 Plant regulator RWP-RK family protein (.1.2) AT1G76350 412 / 3e-133 NLP5 Plant regulator RWP-RK family protein (.1) AT4G38340 392 / 6e-126 NLP3 Plant regulator RWP-RK family protein (.1) AT1G64530 359 / 1e-112 NLP6 Plant regulator RWP-RK family protein (.1) AT2G17150 303 / 2e-93 NLP1 Plant regulator RWP-RK family protein (.1.2) AT2G43500 304 / 3e-91 NLP8 Plant regulator RWP-RK family protein (.1.2) AT4G35270 303 / 8e-91 NLP2 Plant regulator RWP-RK family protein (.1) AT3G59580 291 / 1e-86 NLP9 Plant regulator RWP-RK family protein (.1.2) AT4G24020 273 / 9e-80 NLP7 NIN like protein 7 (.1) AT5G66990 50 / 2e-06 RKD3 RWP-RK domain-containing 3, RWP-RK domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013224 [exp] 1133 / 0 AT1G20640 600 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10012257 [exp] 674 / 0 AT1G20640 785 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10016018 [exp] 659 / 0 AT1G76350 775 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10023049 [exp] 355 / 9e-112 AT4G24020 783 / 0.0 NIN like protein 7 (.1) Lus10019368 [exp] 339 / 2e-104 AT2G43500 764 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10008143 [exp] 337 / 1e-103 AT3G59580 769 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10023930 [exp] 306 / 6e-93 AT4G35270 669 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10014428 [exp] 298 / 5e-90 AT4G35270 659 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10003199 [exp] 274 / 5e-80 AT4G24020 953 / 0.0 NIN like protein 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G009700 [exp] 437 / 1e-141 AT1G20640 824 / 0.0 Plant regulator RWP-RK family protein (.1.2) Potri.005G251700 [exp] 436 / 3e-141 AT4G35270 739 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.009G166400 [exp] 335 / 7e-103 AT4G35270 730 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.009G166932 [exp] 335 / 2e-102 AT4G35270 874 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.009G166666 [exp] 331 / 3e-101 AT4G35270 702 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.004G205500 [exp] 323 / 3e-98 AT4G35270 829 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.016G042900 [exp] 318 / 1e-96 AT4G35270 572 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.001G087900 [exp] 280 / 7e-82 AT4G24020 991 / 0.0 NIN like protein 7 (.1) Potri.003G143000 [exp] 277 / 7e-81 AT4G24020 994 / 0.0 NIN like protein 7 (.1) Potri.017G018500 [exp] 265 / 8e-77 AT2G43500 811 / 0.0 Plant regulator RWP-RK family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02042 [flax] [poplar] RWP-RK RWP-RK domain CL0072 [flax] [poplar] Ubiquitin PF00564 [flax] [poplar] PB1 PB1 domain
Representative CDS sequence Show only first row Show all	>Lus10030744 pacid=23155379 polypeptide=Lus10030744 locus=Lus10030744.g ID=Lus10030744.BGIv1.0 annot-version=v1.0 ATGGATGGCTCTTGGCAATCTGGTATGATGCTTGGTTCGCAGTCAGTCATGGACTCCGATTACATTGACGACTTTCTGCTAGATGGCTCCTGGTTCGAGG CGACTGATGTATCAGAGTTTCTCAATTACTCTCCATCTAATCATAATCTTGGTCCAACCTCAAACGATGCTGATACATCTGCTGCTACTACTTCTCAAAC CAACAATGAAGAAAATCCAAGCTCTGCAATTTCAGTCAAGGACAGATTAACTGGAGCAATCGGTTGCATTCGAGACTTGATCAATGATAAGGATGTCCTT GTACAAATATGGGTCCCGATGGAAGAAATGGGCAGGCGGGTTTTAACAACTAAAGATCAGCCCTTTGCACTTGATGGAGGTTTGGCGAACTATAGGGACA TATCTACAATCTATCAGTTTTCAGCTGAAGAAGAGAGTGACTTCTCCAGTATGCCTGGTCGTGTTTTCTTGGCTCAAGTTCCGGAGTGGAGTCCTGATGT TCAGTTGTTTACAAGTGAAGAGTGTCCACGAGCCGATCATGCTCGACAGTATAACGTGCGTGGAACTCTGGCCGTTCCTGTCTTTGAGCAAAATAGTGAA ATTTGTTTAGGTGTTGTTGAGATTTTGACGACTAGACGAGGAAACAAGTACCAGTCGGAGCTTGAGAAGGTCTCCAAAGCACTTGAGGCTTTTGATCTCA GGAGTTGTGGAACACCAATCTCCCAAACTATAAAGCCAACTACTGATCTAGCCTACAAAGCAGCACTGCCTGAAATCAAACAAGTCTTGAAAACTGCCTG CGAGACACATGAACTCCCCTTAGCTCAAACTTGGATCCCATGCACCATCCAACACCAAAACACTCAACATCATCCAGACTCCAACTGTCCCCAACACTGT CTCTCAACTGTGGAGGAAGCTTGCATCACACGCAATCCCAATGTCAAAGATTTCCACAAGGCCTGTTCGGAGCAGCACTTGCTTAAGGGTCAAGGCGTTG CTGGAAAAGCATTGGCGACGAACGAGCCTTGCTTCTCTAGCGACATAACTCGTTACAGCAAGGCTGAGTACCCACTCTCGCAAATTGCGAGAGTGTTTGG ATTGTGTGGTGCGGTTGCTATTCGACTGAGGAGTACTGAGATTGCTGGTGAAGCGGATTTTGTGCTCGAGTTCTTCTTGCCCGTGGATTGTAGGACTCTT GATGAGCAACATAGGATGCTTAATTCGTTGTCCATTGTGGTTGGAGAAGCTTCCCGGACGTTGAGAGTTGTGACAGATGAAGAACTAGAATGTGAGAAAG GATGGAAGTTGGGTAAATCAGTAGAGAGGAAACGCATAAAGGCAGAAAGAAGGATCAGCTTGGAGGTTCTTAGGCAACACTTTTCTGGCACTTTGAAAGA TGCTGCAATCAGTCTTGGCGTGTGCTCAACAACCCTGAAAAGAATATGCAGGCAACACGGAATCACAAGGTGGCCATCTCGCAAACTGAAGAAAGTTGGT CACTCTCTGAAGAAGCTCCAAGTAGTAATGGACTCTGTTGAAGGCACCTCAGGTTCTCTGCATATCAATTCTTTCTACACAAACTTCCCCAATCTCGATT CTAATAATCCTCCGGAGCCGCCATCAATCATCATCACACAGCCTGATCACAATGCCTCGAAACTGAAACCAACTTCTTCTCCATCGTCCTGCAGTCAAAG CTATGCCAGTTCAGCAGATCAGCTTCCCGCTCGTTCCCCTGCAGGGGAAGAACAGGGCAATGCGGTGTCGAAGAATTCCTCGAATCGAGTTCAGAGAGTG AAAGTGGCGTACGGGGACGAGATAGTGAGGTTCCGGATTTCGAGCAGCTGGGGGTACAGAGACTTGCTGGTGGAGATTGGGAGGCGGTTTGGTATAGAAG AGATGAAGAAGTTTGATGTTAAGTATTTGGACGATGACTCGGAGTGGGTGCAGTTGACTTGTGATGAAGACTTGGAGGAATGTGTGGAAGTCTGCCATGC TTCAGTTAACCAAACTGTCAAGCTCTTGCTTCAGGTTTCCTCTCGTGGCAGTTCAGATTGA
AA sequence Show only first row Show all	>Lus10030744 pacid=23155379 polypeptide=Lus10030744 locus=Lus10030744.g ID=Lus10030744.BGIv1.0 annot-version=v1.0 MDGSWQSGMMLGSQSVMDSDYIDDFLLDGSWFEATDVSEFLNYSPSNHNLGPTSNDADTSAATTSQTNNEENPSSAISVKDRLTGAIGCIRDLINDKDVL VQIWVPMEEMGRRVLTTKDQPFALDGGLANYRDISTIYQFSAEEESDFSSMPGRVFLAQVPEWSPDVQLFTSEECPRADHARQYNVRGTLAVPVFEQNSE ICLGVVEILTTRRGNKYQSELEKVSKALEAFDLRSCGTPISQTIKPTTDLAYKAALPEIKQVLKTACETHELPLAQTWIPCTIQHQNTQHHPDSNCPQHC LSTVEEACITRNPNVKDFHKACSEQHLLKGQGVAGKALATNEPCFSSDITRYSKAEYPLSQIARVFGLCGAVAIRLRSTEIAGEADFVLEFFLPVDCRTL DEQHRMLNSLSIVVGEASRTLRVVTDEELECEKGWKLGKSVERKRIKAERRISLEVLRQHFSGTLKDAAISLGVCSTTLKRICRQHGITRWPSRKLKKVG HSLKKLQVVMDSVEGTSGSLHINSFYTNFPNLDSNNPPEPPSIIITQPDHNASKLKPTSSPSSCSQSYASSADQLPARSPAGEEQGNAVSKNSSNRVQRV KVAYGDEIVRFRISSSWGYRDLLVEIGRRFGIEEMKKFDVKYLDDDSEWVQLTCDEDLEECVEVCHASVNQTVKLLLQVSSRGSSD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20640		NLP4	Plant regulator RWP-RK family ...		Lus10030744 [exp]	0	1
AT1G33030			O-methyltransferase family pro...		Lus10014825 [exp]	2.0	0.7962
AT2G34930			disease resistance family prot...		Lus10041266 [exp]	5.3	0.7010
AT4G27250			NAD(P)-binding Rossmann-fold s...		Lus10021294 [exp]	8.9	0.7373
AT1G57790			F-box family protein (.1)		Lus10013738 [exp]	22.6	0.7583
AT5G41410	HD	BEL1	BELL 1, POX (plant homeobox) f...		Lus10024661 [exp]	23.5	0.7531
AT3G14130			Aldolase-type TIM barrel famil...		Lus10013173 [exp]	30.9	0.7504
AT5G41410	HD	BEL1	BELL 1, POX (plant homeobox) f...		Lus10032292 [exp]	38.5	0.7132
AT4G02210			unknown protein		Lus10027531 [exp]	44.2	0.7050
AT4G31805			WRKY family transcription fact...		Lus10024451 [exp]	46.6	0.7250
AT1G03430		AHP5	histidine-containing phosphotr...		Lus10042680 [exp]	50.6	0.7078

Compare expression of checked genes

Lus10030744 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.