Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35090 947 / 0 CAT2 catalase 2 (.1.2) AT1G20630 914 / 0 CAT1 catalase 1 (.1) AT1G20620 840 / 0 SEN2, CAT3, ATCAT3 SENESCENCE 2, catalase 3 (.1.2.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013225 [exp] 1025 / 0 AT4G35090 942 / 0.0 catalase 2 (.1.2) Lus10012258 [exp] 991 / 0 AT4G35090 945 / 0.0 catalase 2 (.1.2) Lus10016017 [exp] 852 / 0 AT4G35090 822 / 0.0 catalase 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G009800 [exp] 980 / 0 AT4G35090 960 / 0.0 catalase 2 (.1.2) Potri.005G251600 [exp] 972 / 0 AT4G35090 944 / 0.0 catalase 2 (.1.2) Potri.005G100400 [exp] 934 / 0 AT4G35090 958 / 0.0 catalase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06628 [flax] [poplar] Catalase-rel Catalase-related immune-responsive PF00199 [flax] [poplar] Catalase Catalase
Representative CDS sequence Show only first row Show all	>Lus10030745 pacid=23155419 polypeptide=Lus10030745 locus=Lus10030745.g ID=Lus10030745.BGIv1.0 annot-version=v1.0 ATGGATCCTTACAAGCATCGTCCTTCGAGCGCTTTCAATTCTCCTTTCTGGACTACCAATTCTGGAGCTCCAGTATGGAACAACAACTCTTCCATGACCG TTGGCCCTAGAGGTCCAATTCTGCTAGAGGATTATCATTTGGTGGAGAAACTGGCCAACTTTGATAGGGAACGTATTCCAGAGCGTGTTGTCCATGCTAG GGGAGCAAGTGCAAAGGGTTTCTTTGAAGTCACCCATGATATCTCTAATCTCACATGTGCTGATTTCCTCCGAGCTCCTGGTGTCCAGACACCTGTTATT GTTCGATTCTCTACCGTTATCCATGAACGTGGCAGTCCTGAAACTCTGAGAGATCCTAGGGGTTTTGCAGTGAAGTTCTACACTAGAGAGGGGAACTGGG ATCTTGTCGGTAACAATTTCCCAGTTTTCTTTGTCCGTGATGGAATGAAGTTCCCTGATATGGTACATGCCCTCAAGCCAAACCCGAAATCTCACATTCA GGAGAACTGGAGAATCCTCGATTTCTTCTCACATCACCCTGAAAGTTTGCATATGTTCTCCTTCCTCTTTGACGATCTCGGTGTTCCTCAAGATTACAGG CACATGGAGGGTTCAGGTGTTAACACCTATACATTGGTGAGCAAGTCTGGCAAAGCTCACCTTGTCAAGTTTCACTGGAAACCCACTTGTGGTGTCAAGT GTCTATTGGAGAATGAGGCAATTAAGGTTGGTGGAGCAAATCATAGCCATGCTACTCAAGATCTGTATGATTCAATTGCTGCTGGAAACTACCCAGAATG GAAGCTTTTCATCCAGACAATTGATCCAGATCACGAGGATAGATTTGATTTTGACCCACTTGACGTGACCAAGACCTGGCCTGAAGATATCATTCCTCTA CAGCCGGTTGGCCGCTTGGTCTTGAACAAGAACATCGATAACTTCTTTGCGGAAAACGAGCAGCTTGCTTTCTGCCCTGCAATCGTGGTTCCTGGTGTTT ATTATTCAGATGACAAGCTTCTTCAGACTCGTATCTTCTCCTATTCCGACACTCAGAGGCACCGACTTGGACCAAACTATTTGCAGCTCCCTGTTAATGC TCCAAAGTGTGCTCATCACAACAATCACCATGAAGGTTTCATGAACTTCATGCACAGGGATGAAGAGGTAAACTACTTCCCATCAAGGTACGATCCAGTT CGCAACTCTGAGCAATTCCCCATTCCTCCTCAAGTCTGCACTGGAAGGCGTGAGAAGTGCGTGATTTCCAAAGAGAACAACTTCAAGCAACCTGGGGAGA GATACCGCTCATGGGCACCTGACAGGCAAGAAAGATTCATCTGCCGATGGATCGATGCCCTTTCCGATCCTCGTGTCACCCACGAAATCCGCAGCATCTG GATCTCATACTGGTCACAGGCTGACCAATCTCTCGGACAGAAGTTAGCAAGCCGTATGAACGTGAAGCCAAGCATTTGA
AA sequence Show only first row Show all	>Lus10030745 pacid=23155419 polypeptide=Lus10030745 locus=Lus10030745.g ID=Lus10030745.BGIv1.0 annot-version=v1.0 MDPYKHRPSSAFNSPFWTTNSGAPVWNNNSSMTVGPRGPILLEDYHLVEKLANFDRERIPERVVHARGASAKGFFEVTHDISNLTCADFLRAPGVQTPVI VRFSTVIHERGSPETLRDPRGFAVKFYTREGNWDLVGNNFPVFFVRDGMKFPDMVHALKPNPKSHIQENWRILDFFSHHPESLHMFSFLFDDLGVPQDYR HMEGSGVNTYTLVSKSGKAHLVKFHWKPTCGVKCLLENEAIKVGGANHSHATQDLYDSIAAGNYPEWKLFIQTIDPDHEDRFDFDPLDVTKTWPEDIIPL QPVGRLVLNKNIDNFFAENEQLAFCPAIVVPGVYYSDDKLLQTRIFSYSDTQRHRLGPNYLQLPVNAPKCAHHNNHHEGFMNFMHRDEEVNYFPSRYDPV RNSEQFPIPPQVCTGRREKCVISKENNFKQPGERYRSWAPDRQERFICRWIDALSDPRVTHEIRSIWISYWSQADQSLGQKLASRMNVKPSI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35090		CAT2	catalase 2 (.1.2)		Lus10030745 [exp]	0	1
AT4G35090		CAT2	catalase 2 (.1.2)		Lus10013225 [exp]	1.4	0.9238
AT3G27820		ATMDAR4	monodehydroascorbate reductase...		Lus10013079 [exp]	8.9	0.8529
AT4G32940		GAMMAVPE, GAMMA...	gamma vacuolar processing enzy...		Lus10007450 [exp]	13.5	0.8770
AT1G09880			Rhamnogalacturonate lyase fami...		Lus10030232 [exp]	14.0	0.8272
AT5G16110			unknown protein		Lus10028474 [exp]	16.4	0.8407
AT4G19860			alpha/beta-Hydrolases superfam...		Lus10017142 [exp]	17.9	0.8755
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Lus10029123 [exp]	19.8	0.8279
AT1G14860		ATNUDT18	nudix hydrolase homolog 18 (.1...		Lus10034598 [exp]	24.2	0.8111
AT2G35060		KUP11	K+ uptake permease 11, K+ upta...		Lus10018324 [exp]	33.6	0.8362
AT2G16790			P-loop containing nucleoside t...		Lus10041345 [exp]	33.8	0.8176

Compare expression of checked genes

Lus10030745 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.