Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20575 417 / 7e-150 DPMS1 dolichol phosphate mannose synthase 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT2G39630 56 / 3e-09 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013228 [exp] 453 / 5e-164 AT1G20575 450 / 1e-162 dolichol phosphate mannose synthase 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10023414 [exp] 56 / 8e-09 AT2G39630 504 / 0.0 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) Lus10040296 [exp] 55 / 2e-08 AT2G39630 476 / 3e-170 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) Lus10005164 [exp] 45 / 2e-05 AT2G39630 387 / 2e-131 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) Lus10001691 [exp] 44 / 8e-05 AT2G39630 479 / 3e-171 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G010300 [exp] 420 / 7e-151 AT1G20575 452 / 1e-163 dolichol phosphate mannose synthase 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.005G250900 [exp] 418 / 3e-150 AT1G20575 447 / 6e-162 dolichol phosphate mannose synthase 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.008G055700 [exp] 54 / 3e-08 AT2G39630 499 / 5e-179 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) Potri.010G204000 [exp] 50 / 5e-07 AT2G39630 509 / 0.0 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF00535 [flax] [poplar] Glycos_transf_2 Glycosyl transferase family 2
Representative CDS sequence Show only first row Show all	>Lus10030748 pacid=23155184 polypeptide=Lus10030748 locus=Lus10030748.g ID=Lus10030748.BGIv1.0 annot-version=v1.0 ATGGCAGGGGAGGAGCGGAAGAACGAAGGGAAGAACAAGTACAGCATAATTATCCCTACATACAACGAGCGTCTCAACATCGCCATCATCGTTTACCTCA TTTTCAAGCATCTCCGGGATGTCGATTTTGAAATTATAGTTGTGGATGATGGGAGCCCCGACGGCACTCAAGATATTGTTAAGCAGTTACAGCAAGTGTA TGGCGAAGACCGTGTTTTATTAAGAGCTAGACCGAAAAAGCTTGGTCTTGGCACAGCTTACGTTCATGGGTTGAAGCATGCTTCTGGGAATTTTGTAGTG ATAATGGATGCTGATCTATCCCACCATCCAAAGTACCTGCCGAGCTTTATCAAGAAACAGTTGGAGACTGGTGCAAGTATCGTTACTGGAACCAGATACG TGACAGGTGGCGGTGTCCATGGTTGGAGTCTTATGCGGAAACTAACCAGCAGAGGAGCCAATGTCTTGGCTCAAACATTCTTATGGCCTGGTGTCTCTGA CTTGACAGGATCTTTCCGGCTTTACAAGAAATCCGTGCTCGAAGATGTCATAGCTTCAGTTGTTAGCAAGGGGTATGTATTTCAGATGGAGATGATAGTT CGTGCTTCTAGAAAAGGATACCGTATCGAGGAGGTACCGATTACATTCGTTGACCGTGTATTTGGAAGCTCGAAACTCGGAGGATCGGAAATTGTAGAAT ACCTGAAGGGCCTTGCTTATCTGCTGGTTACAACTTAG
AA sequence Show only first row Show all	>Lus10030748 pacid=23155184 polypeptide=Lus10030748 locus=Lus10030748.g ID=Lus10030748.BGIv1.0 annot-version=v1.0 MAGEERKNEGKNKYSIIIPTYNERLNIAIIVYLIFKHLRDVDFEIIVVDDGSPDGTQDIVKQLQQVYGEDRVLLRARPKKLGLGTAYVHGLKHASGNFVV IMDADLSHHPKYLPSFIKKQLETGASIVTGTRYVTGGGVHGWSLMRKLTSRGANVLAQTFLWPGVSDLTGSFRLYKKSVLEDVIASVVSKGYVFQMEMIV RASRKGYRIEEVPITFVDRVFGSSKLGGSEIVEYLKGLAYLLVTT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20575		DPMS1	dolichol phosphate mannose syn...		Lus10030748 [exp]	0	1
AT2G18390		HAL, ARL2, TTN5...	TITAN 5, HALLIMASCH, ARF-LIKE ...		Lus10026383 [exp]	4.4	0.9064
AT1G03220			Eukaryotic aspartyl protease f...		Lus10041223 [exp]	5.5	0.8950
AT3G18820		RAB71, AtRABG3f...	RAB GTPase homolog G3F (.1)		Lus10023582 [exp]	5.9	0.8949
AT1G73177		APC13, BNS	anaphase-promoting complex 13,...		Lus10007286 [exp]	9.4	0.8923
AT4G33380			unknown protein		Lus10009765 [exp]	9.8	0.8804
AT4G23885			unknown protein		Lus10001827 [exp]	10.5	0.8885
AT2G34980		SETH1	phosphatidylinositolglycan syn...		Lus10009915 [exp]	11.5	0.8328
AT3G14470			NB-ARC domain-containing disea...		Lus10022792 [exp]	11.5	0.9047
AT2G32080		PUR ALPHA-1, PU...	purin-rich alpha 1 (.1.2)		Lus10001782 [exp]	11.7	0.8991
AT2G42590		GENERALREGULATO...	general regulatory factor 9 (....		Lus10001894 [exp]	12.0	0.8584

Compare expression of checked genes

Lus10030748 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.