Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42330 135 / 2e-39 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013229 [exp] 354 / 1e-125 AT5G42330 139 / 4e-41 unknown protein Lus10012265 [exp] 180 / 8e-57 AT5G42330 82 / 5e-19 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G250800 [exp] 192 / 7e-62 AT5G42330 171 / 5e-54 unknown protein Potri.002G010400 [exp] 164 / 6e-51 AT5G42330 142 / 2e-42 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030749 pacid=23155411 polypeptide=Lus10030749 locus=Lus10030749.g ID=Lus10030749.BGIv1.0 annot-version=v1.0 ATGAAATTCGATCGGAAGCCACCTCTCCCCAAATCGCCGATCCGCCTCCGCTCCCGTCAAGTCACCTCCGCCTCCTTGCAGACTCCTCCCGGATCCTTGA CGAAATCGGCGAAACCTAGCCGCGCCTTCGGTTTCAACGACGCCGAGGAACTGCGTCCGGAGTACCGCTCAATGTCCTGCGAGCTGCGGGCGCTGGCGAA AATGGTGAGGGACGAGCTCGGAAACGGAGATCCGCCAGCTAGATCCAGAAACGGAGAGAGTCTGAGAGCTAATTCGAGTCCGATGTCCTTCCAGAGAGGG AGGCTGTACGAGGAGTACTCTGCCAGGAGGAACGAGCGGCTGAAGAGGAAGAGAGGCGGCGGCGGCGGTGGTGGGAGTGAGGATTCGATGAGGACGCCGT ACAAATTGGGGGTGACGGTGACGTCGTCGAAGAGAAGGGATTCGATGAAGAAGACGGAGAGCTTGAGGAAATCCGTGGTGGCGTCTGGGTATGGAGGAGG GGATACTCCGAGGTATTTGTTGAGGAGTATGTGTAAGGAGAATAAAGCGCCGACAAAGCTGCCGCTGCCGCCGGTGGCTGCTCTTCGAGTGCCGGCGGTT GAATTGGAGAGATCTGCGATTCCGAGTGGACGGAAGATTGGAGTGAGGAGAACTGTTAGGAAGATTTGA
AA sequence Show only first row Show all	>Lus10030749 pacid=23155411 polypeptide=Lus10030749 locus=Lus10030749.g ID=Lus10030749.BGIv1.0 annot-version=v1.0 MKFDRKPPLPKSPIRLRSRQVTSASLQTPPGSLTKSAKPSRAFGFNDAEELRPEYRSMSCELRALAKMVRDELGNGDPPARSRNGESLRANSSPMSFQRG RLYEEYSARRNERLKRKRGGGGGGGSEDSMRTPYKLGVTVTSSKRRDSMKKTESLRKSVVASGYGGGDTPRYLLRSMCKENKAPTKLPLPPVAALRVPAV ELERSAIPSGRKIGVRRTVRKI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42330			unknown protein		Lus10030749 [exp]	0	1
AT4G38070	bHLH		basic helix-loop-helix (bHLH) ...		Lus10035943 [exp]	1.0	0.9702
AT4G01730			DHHC-type zinc finger family p...		Lus10038029 [exp]	2.0	0.9680
AT5G66230			Chalcone-flavanone isomerase f...		Lus10014261 [exp]	5.7	0.9582
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10040517 [exp]	6.9	0.9600
AT5G66230			Chalcone-flavanone isomerase f...		Lus10025961 [exp]	7.4	0.9580
AT4G18570			Tetratricopeptide repeat (TPR)...		Lus10000986 [exp]	7.5	0.9520
AT5G42330			unknown protein		Lus10013229 [exp]	7.9	0.9498
AT3G48160	E2F_DP	E2FE, E2L3, DEL...	E2F-LIKE 3, DP-E2F-like 1 (.1....		Lus10042941 [exp]	8.8	0.9472
AT3G14740			RING/FYVE/PHD zinc finger supe...		Lus10038142 [exp]	11.8	0.9487
AT1G54690		HTA3 ,G-H2AX ,G...	histone H2A 3, GAMMA H2AX, gam...		Lus10003750 [exp]	13.3	0.9422

Compare expression of checked genes

Lus10030749 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.