Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19250 138 / 2e-37 FMO1 flavin-dependent monooxygenase 1 (.1) AT5G45180 113 / 1e-28 Flavin-binding monooxygenase family protein (.1) AT1G62570 51 / 3e-07 FMOGS-OX4 ,FMO GS-OX4 flavin-monooxygenase glucosinolate S-oxygenase 4 (.1) AT1G12130 48 / 5e-06 Flavin-binding monooxygenase family protein (.1) AT1G65860 45 / 5e-05 FMOGS-OX1 ,FMO GS-OX1 flavin-monooxygenase glucosinolate S-oxygenase 1 (.1) AT1G12140 42 / 0.0003 FMOGS-OX5 ,FMO GS-OX5 flavin-monooxygenase glucosinolate S-oxygenase 5 (.1.2) AT1G12160 41 / 0.0005 Flavin-binding monooxygenase family protein (.1) AT1G62560 41 / 0.0005 FMOGS-OX3 ,FMO GS-OX3 flavin-monooxygenase glucosinolate S-oxygenase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013230 [exp] 427 / 7e-149 AT1G19250 341 / 2e-111 flavin-dependent monooxygenase 1 (.1) Lus10023940 [exp] 213 / 1e-65 AT1G19250 399 / 3e-134 flavin-dependent monooxygenase 1 (.1) Lus10023941 [exp] 206 / 1e-64 AT1G19250 241 / 2e-75 flavin-dependent monooxygenase 1 (.1) Lus10023942 [exp] 164 / 3e-48 AT5G45180 215 / 4e-65 Flavin-binding monooxygenase family protein (.1) Lus10014439 [exp] 139 / 3e-38 AT1G19250 209 / 1e-61 flavin-dependent monooxygenase 1 (.1) Lus10020001 [exp] 131 / 7e-35 AT1G19250 709 / 0.0 flavin-dependent monooxygenase 1 (.1) Lus10038126 [exp] 115 / 4e-29 AT1G19250 735 / 0.0 flavin-dependent monooxygenase 1 (.1) Lus10005178 [exp] 113 / 2e-28 AT1G19250 744 / 0.0 flavin-dependent monooxygenase 1 (.1) Lus10014441 [exp] 67 / 2e-12 AT4G38380 501 / 2e-167 MATE efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G250600 [exp] 301 / 2e-99 AT1G19250 330 / 4e-107 flavin-dependent monooxygenase 1 (.1) Potri.009G143500 [exp] 211 / 6e-65 AT1G19250 400 / 2e-134 flavin-dependent monooxygenase 1 (.1) Potri.006G060300 [exp] 200 / 1e-61 AT1G19250 285 / 3e-91 flavin-dependent monooxygenase 1 (.1) Potri.006G060200 [exp] 200 / 1e-60 AT1G19250 378 / 5e-126 flavin-dependent monooxygenase 1 (.1) Potri.018G115800 [exp] 198 / 6e-60 AT1G19250 374 / 4e-124 flavin-dependent monooxygenase 1 (.1) Potri.001G335900 [exp] 135 / 2e-36 AT1G19250 630 / 0.0 flavin-dependent monooxygenase 1 (.1) Potri.006G137600 [exp] 129 / 5e-34 AT1G19250 699 / 0.0 flavin-dependent monooxygenase 1 (.1) Potri.013G019900 [exp] 44 / 5e-05 AT1G62600 513 / 0.0 Flavin-binding monooxygenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00743 [flax] [poplar] FMO-like Flavin-binding monooxygenase-like
Representative CDS sequence Show only first row Show all	>Lus10030750 pacid=23155309 polypeptide=Lus10030750 locus=Lus10030750.g ID=Lus10030750.BGIv1.0 annot-version=v1.0 ATGAGGCACTACCCCCAACCGACCGAACAAGGCAAAAACACTTCAAAAACTCATTTCCTAAAAACCCTCAACCGGTTTGCAGAACTCATGATCCACAAGC CCCGGGAAGGGTTCTTCCCATGGCTGCTTGCCTTCCTCCTTTCCCCTCTGCTGTGGATACAATCCAAAGCAGTGGAATCCTACCTGAAGTGGACATACCC ATTAAAGAAATACAACATGATTCCAAACCATAGCTTCTTCAAGCAGATCTTCAGCTGCATGTTCACCATTCTCCCCAACCATTTCTACCAACGAGTAAAC GACGGCAGCCTCCTCCTCGTCAAATCCAAAACCTTCAGCTTCTGCGAAAACGGTCTAATACTATCTCAAGAACAGCCACCAATTCCAGCTCAAATCGTCA TTTTCGCAACTGGCTACAAAAGCACAGAGAAGCTCAAGAGCATCTTCAAATCCAGCTACTTCCAGAATTGCATTGCCAACTCAACGGCTCCCTTTTACAG GGAATCGATTCATCCGAGAATCCCGCAGCTGGCGATTCTGGGATATGCGGACAGTGCGTCGTACCTTTACACGACGGAGATGAGGAGCATGTGGGTGGCG CATCTGCTCGCCGAGAAGTTCAAGTTGCCGTCGGTGAGGGAAATGGAAGATGAGACGAGAGAATGGGAGAAGTGTTCGAGGATGTACGCCAAGGAGGATT ACAAGAGTTCGTGTGCGAGTGTGAAGCTGCCGATCTTGTTCAACGATCTTCTGTGCAGAGATATGGATGGGGTTAAGGTCGAGAAGGAAGAATGGGGTGT TCGCGGAAATGTTTGGGCCTTCTTTGCCAGGTGA
AA sequence Show only first row Show all	>Lus10030750 pacid=23155309 polypeptide=Lus10030750 locus=Lus10030750.g ID=Lus10030750.BGIv1.0 annot-version=v1.0 MRHYPQPTEQGKNTSKTHFLKTLNRFAELMIHKPREGFFPWLLAFLLSPLLWIQSKAVESYLKWTYPLKKYNMIPNHSFFKQIFSCMFTILPNHFYQRVN DGSLLLVKSKTFSFCENGLILSQEQPPIPAQIVIFATGYKSTEKLKSIFKSSYFQNCIANSTAPFYRESIHPRIPQLAILGYADSASYLYTTEMRSMWVA HLLAEKFKLPSVREMEDETREWEKCSRMYAKEDYKSSCASVKLPILFNDLLCRDMDGVKVEKEEWGVRGNVWAFFAR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19250		FMO1	flavin-dependent monooxygenase...		Lus10030750 [exp]	0	1
AT1G08500		AtENODL18	early nodulin-like protein 18 ...		Lus10009231 [exp]	1.7	0.7918
AT5G22260		MS1	male sterility 1, RING/FYVE/PH...		Lus10030773 [exp]	4.6	0.7940
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Lus10024889 [exp]	6.0	0.7924
AT5G51750		ATSBT1.3	subtilase 1.3 (.1)		Lus10018720 [exp]	7.7	0.7452
AT5G24600			Protein of unknown function, D...		Lus10015590 [exp]	8.2	0.7818
AT3G14470			NB-ARC domain-containing disea...		Lus10022900 [exp]	12.2	0.7680
AT2G26680			unknown protein		Lus10030089 [exp]	13.6	0.7257
AT2G17240			unknown protein		Lus10043214 [exp]	17.0	0.7248
AT2G45460	FHA		SMAD/FHA domain-containing pro...		Lus10015860 [exp]	17.5	0.7064
AT5G39050		PMAT1	phenolic glucoside malonyltran...		Lus10035802 [exp]	17.5	0.7275

Compare expression of checked genes

Lus10030750 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.