Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26040 280 / 5e-90 HXXXD-type acyl-transferase family protein (.1) AT4G15390 240 / 2e-74 HXXXD-type acyl-transferase family protein (.1) AT1G24420 236 / 5e-73 HXXXD-type acyl-transferase family protein (.1) AT5G47950 228 / 4e-70 HXXXD-type acyl-transferase family protein (.1) AT1G24430 225 / 6e-69 HXXXD-type acyl-transferase family protein (.1) AT3G30280 225 / 8e-69 HXXXD-type acyl-transferase family protein (.1) AT5G23970 214 / 7e-65 HXXXD-type acyl-transferase family protein (.1) AT5G47980 213 / 6e-64 HXXXD-type acyl-transferase family protein (.1) AT4G15400 177 / 2e-50 HXXXD-type acyl-transferase family protein (.1) AT5G41040 151 / 5e-41 HXXXD-type acyl-transferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013231 [exp] 781 / 0 AT3G26040 291 / 5e-94 HXXXD-type acyl-transferase family protein (.1) Lus10025522 [exp] 244 / 1e-75 AT3G26040 236 / 9e-73 HXXXD-type acyl-transferase family protein (.1) Lus10037956 [exp] 243 / 1e-75 AT1G24430 220 / 5e-67 HXXXD-type acyl-transferase family protein (.1) Lus10036929 [exp] 247 / 4e-75 AT3G26040 319 / 1e-102 HXXXD-type acyl-transferase family protein (.1) Lus10038689 [exp] 238 / 1e-73 AT3G26040 214 / 2e-64 HXXXD-type acyl-transferase family protein (.1) Lus10019183 [exp] 233 / 9e-72 AT3G26040 265 / 3e-84 HXXXD-type acyl-transferase family protein (.1) Lus10042433 [exp] 230 / 2e-70 AT3G26040 249 / 8e-78 HXXXD-type acyl-transferase family protein (.1) Lus10039330 [exp] 229 / 7e-70 AT3G26040 240 / 2e-74 HXXXD-type acyl-transferase family protein (.1) Lus10028813 [exp] 227 / 3e-69 AT1G24430 218 / 3e-66 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G010700 [exp] 457 / 5e-159 AT3G26040 306 / 3e-100 HXXXD-type acyl-transferase family protein (.1) Potri.005G250500 [exp] 409 / 5e-140 AT3G26040 304 / 3e-99 HXXXD-type acyl-transferase family protein (.1) Potri.010G054100 [exp] 301 / 5e-98 AT3G26040 397 / 1e-135 HXXXD-type acyl-transferase family protein (.1) Potri.008G180400 [exp] 298 / 4e-97 AT3G26040 383 / 4e-130 HXXXD-type acyl-transferase family protein (.1) Potri.008G033500 [exp] 295 / 4e-95 AT3G26040 290 / 3e-93 HXXXD-type acyl-transferase family protein (.1) Potri.008G034300 [exp] 291 / 3e-94 AT3G26040 280 / 1e-89 HXXXD-type acyl-transferase family protein (.1) Potri.008G034200 [exp] 280 / 6e-90 AT3G26040 254 / 9e-80 HXXXD-type acyl-transferase family protein (.1) Potri.010G053800 [exp] 275 / 3e-88 AT1G24430 425 / 6e-147 HXXXD-type acyl-transferase family protein (.1) Potri.010G054002 [exp] 273 / 3e-87 AT1G24430 426 / 3e-147 HXXXD-type acyl-transferase family protein (.1) Potri.008G034100 [exp] 271 / 3e-86 AT3G26040 270 / 4e-86 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10030751 pacid=23155230 polypeptide=Lus10030751 locus=Lus10030751.g ID=Lus10030751.BGIv1.0 annot-version=v1.0 ATGAAGCTGCAAGTAAAAATCACATCCAAACAAACCATAAAGCCATCTTCTCCGACGCCGCCACACCTCAGAACCTTCAACCTCTCCTTACTCGACCAAC TCATCCCAGCTCCCTACGCGCCGCTCGTCCTCTTCTACCCCCAAACTGACGGCGTGTCACACTCCTCTAATATCGACGTCCTTAAATCCTCCCTCACTGA CGTATTGACCGCGTTCTACCCGCTCGCTGGAACCATCTCCCCCGACGACCTCTCCATCGACTGCAATGACAAAGGAGTGAACTTTGTCGAAGCCCGAACT GATTGCTCCATGACCCATTTCCTCGTCCGGCCTGATCTCCTCTCGCTCCAGAAATTACTACCCGTCGACCCGGGGTTTCTCGAGCCAGAGGAGCGGCGCG TTGCTAACGTTCAGGTGACTGAATTCTCCTGCGGAGGGATCGCGGTTGCTGTGTGCATCTCCCACAAGATCCTTGACGGTGTCGGATTGAGCACTTTCCT CAAGGCATGGACCACCTCAGCTCGTGAAAATCAAAATAGTATGCCCTTCATTCCCAATTTCGTCGCTGGGACTCTGTTTCCCTCGAGGGAGTCCACGTGG CTCCGGGACGCATCAATGCCGATGTGGGGATCGTTCTTCCGGACGGGGAAATGCATAACCCGACGGATTGTGTTCGATTCGAAGTCAATCGAATCACTCA AGGTTCGGTCAGCTGCTCGGGGATCGCACCCGACCCGAGTGGAGGTCGTCTCCGCTTTCCTCTGGAAATCAGTGATGGAAGCAACGGAGAAGCTCACCGG CGGGGGAAAGAAGAGAACTTCGGTTCTGACCCACTTGGTTAACCTCCGGAAGCGGGTGGAGCCGCCGATGTCGGAGAATTCGATCGGAAACCTCCTCTGG ATCTCGTCGGCGAAATCCGACCCGACGACAGAGCGGGAACTGGGGGAATTGGCGGGGAAGGTTAGAGATTCGATATCGAAAATCGACGACGGGTTCGTGA GGAAGATGAGAGGGAAGGAAGGGAGATCGGCGATGGTTGAGACGATGGAGGAGATCGTGGAGGTGAAGAAGAACAGAGGGACGACGGTGGATTTCTTGGG GTTTTCGAGCTGGTGCAGGATGGGGTTTTACGGATCGGATTTCGGGTGGGGTGAACCGGTTTGGGTGAGCAGCTACGGGTTGGAAGGTTCGGTTTTTCTG AATTTGGTGATATTGGCGGATACGAGGTGTGGAAAAGGGATCGAGGCTTGGGTTACGATGGACGAGGAAGAGATTGCGGCTATGGCGGCTGATCCTGAAA TGATCAAGTTTGCTGAATTTGATCCTAGTCCTCTTTCAGGAATTTGA
AA sequence Show only first row Show all	>Lus10030751 pacid=23155230 polypeptide=Lus10030751 locus=Lus10030751.g ID=Lus10030751.BGIv1.0 annot-version=v1.0 MKLQVKITSKQTIKPSSPTPPHLRTFNLSLLDQLIPAPYAPLVLFYPQTDGVSHSSNIDVLKSSLTDVLTAFYPLAGTISPDDLSIDCNDKGVNFVEART DCSMTHFLVRPDLLSLQKLLPVDPGFLEPEERRVANVQVTEFSCGGIAVAVCISHKILDGVGLSTFLKAWTTSARENQNSMPFIPNFVAGTLFPSRESTW LRDASMPMWGSFFRTGKCITRRIVFDSKSIESLKVRSAARGSHPTRVEVVSAFLWKSVMEATEKLTGGGKKRTSVLTHLVNLRKRVEPPMSENSIGNLLW ISSAKSDPTTERELGELAGKVRDSISKIDDGFVRKMRGKEGRSAMVETMEEIVEVKKNRGTTVDFLGFSSWCRMGFYGSDFGWGEPVWVSSYGLEGSVFL NLVILADTRCGKGIEAWVTMDEEEIAAMAADPEMIKFAEFDPSPLSGI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10030751 [exp]	0	1
AT2G19130			S-locus lectin protein kinase ...		Lus10024348 [exp]	4.2	0.7863
AT5G51040			unknown protein		Lus10043024 [exp]	4.8	0.8032
AT3G59080			Eukaryotic aspartyl protease f...		Lus10020759 [exp]	8.1	0.7837
AT5G19980		GONST4	golgi nucleotide sugar transpo...		Lus10018311 [exp]	12.6	0.7612
AT1G64720		CP5	Polyketide cyclase/dehydrase a...		Lus10032938 [exp]	15.2	0.7468
AT3G50930		BCS1	cytochrome BC1 synthesis (.1)		Lus10041918 [exp]	16.4	0.7445
					Lus10018325 [exp]	16.9	0.7547
AT1G02820			Late embryogenesis abundant 3 ...		Lus10027986 [exp]	19.2	0.7665
AT1G29340		ATPUB17, PUB17	ARABIDOPSIS THALIANA PLANT U-B...		Lus10029267 [exp]	19.6	0.7586
AT4G14450		ATBET12	unknown protein		Lus10041157 [exp]	19.6	0.7423

Compare expression of checked genes

Lus10030751 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.