Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G42440 1012 / 0 unknown protein AT1G06720 82 / 7e-16 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013232 [exp] 1446 / 0 AT1G42440 1082 / 0.0 unknown protein Lus10007980 [exp] 87 / 3e-17 AT1G06720 1236 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10013507 [exp] 87 / 4e-17 AT1G06720 1225 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G250100 [exp] 1091 / 0 AT1G42440 1075 / 0.0 unknown protein Potri.017G017700 [exp] 84 / 4e-16 AT1G06720 742 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0575 [flax] [poplar] EFTPs PF04950 [flax] [poplar] RIBIOP_C 40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal CL0575 [flax] [poplar] PF08142 [flax] [poplar] AARP2CN AARP2CN (NUC121) domain
Representative CDS sequence Show only first row Show all	>Lus10030752 pacid=23155405 polypeptide=Lus10030752 locus=Lus10030752.g ID=Lus10030752.BGIv1.0 annot-version=v1.0 ATGGGGGGATCTCGTATCCAAGTTAACAAAGCTCACAAGACACGCTTCACCTCCAAATCCACTCGCAACCTTCACAAAACTTCTCTCAAAGACAAGAATA GGATTGCGAAATCCGATAGCAATGTGGCGAAAGGAGGTCGAGCTGCTCGTCTGCAGCTCAACAAGATGCTCCGGGAGCATAATCGAGCTGCTGTTCTGAA GGAGAAAAGAGCTGCAAGTGGATCAACAAGCCCTCCGCGAGTTATTGTTCTTTTCGGTTTATCTGAATCAGTGGATGTGGATTCACTTGATGTAGATCTC TCGAATGTCTTATCCTCTCAAAATGGTGGCCATGCATCTTCAGCAATTGCCTCCCCAGAGTTCAAAATGAGAGCAACGGTGTTGAAAGCACCACATGGGG ATTTGGTGTCATGCATGGAAATGGCGAAGGTCGCTGATCTGATTGCTTTTGTGGTATCAGCAGACTCTTTCTGTGCAGATGGGAGCCCGGACTTCATTGA TTCCTTTGGGGACCAGTGTTTGTCAGTCTTCCGATCACTTGGTTTGCCCAGCACAGCAGTATTAATTCGTGGTCTACCCCTGGAACTAAAATGGAGAAGC GAGGCAAAAAAAATCTGTGCTTCTTGCCTTGCTGGCGAGTTTCCTGAGGATTGCAAGTTCTATCCTGCAGATACAAAATATGATTTGCGCAAGTTCCTGT CGCTATTTAAGGAGCAGAGGCTGACGGTTCCTCATTGGAGACATCAAAGACCGTACCTTATGTCTCAGAAGGTTGATGTAGTCGCTGATAGCAGCAATAT GCATAATTGCACCCTACTTCTAACAGGGTATCTACGTGCTCGCAGTCTCTCAGTCAATCAGCTGGTTCATGTTTCTGGCGCGGGGGATTTTCAACAACTA AAAATTGAAGTTTTGAGGGATCCTTCTCCTTTAAATTTAAGAAAAGAACCAGATGCAATGGATGCAGAGGAGCTGCTTGATACAGAGGTTATCCGTACTC TGGTTCCTGATTCCATGGCGCAGGAGCCTTTGCTTGTTGAAAATATCCCTGATCCACTTGACCGAGAACAGACATACCCAACCAAGAAAGAACTGGAAGA GGCAGAGAAAAAATTGGAAGAGAGAAAGAAACACCAGAAACATAAATTCCCCAAAAAGAAAGTTGTTCCTCAGGGTACATCGGAATACCAGGCTACATGG ATTGTGGATAGTTCGGATGAGGAAGGTCCTGATGGTGAAAGTGATATCGATGATAGCATGATGGTGGATGAAAGAGATGATCATTATCCTGGTCAAGAAG ACATTAATGACAATGGTATCAAGGATGATCAAGCTTCTTTGCATCTTAGAGACATAGATGGTGATACTGAAACAGATTCTATTATGCCGGAAGTCGAAAA CTTAACAAGGGAACAAGTAGAGGACGAGATAAGAAGAATTAAAAAAGCTCATGCTGACGACGAGGAGTTTCCAGATGAAGTGGATACTCCACTAGACACT CCTGCTAAGATGCGTTTTGCTAAGTACAGAGGTCTGAAGTCATTCAGGACCTCGTCATGGGACCCTAAAGAATCTCTTCCTGTGGACTATTCCAGAATTT TTGCTTTTGACAATTTTCAAAGGACACAGAAGCATGTTCTTGCAAAGGCTTTAGCAAATGATCAGGTTCAAGCAAATGATCAGGTTCAGGCAGATGACTG TGTACAAACTGGCCAGTATGTAAGGCTTCATATCAAGGAAGTACCTATGCATATTGGACGTAAAATATATGAACTTGCAAAGGTAGTACCTCTTGTAGCT AGTGGACTTTTGCAGCATGAGTCCAAGATGTCGGTTCTACATTTTAGCATAAAGAAGCATGATTCATACGAGGCACCAATTAAAGCCAAAGAGGAACTGT TGTTTCACGTTGGGTTTAGGCAATTTGTCGCTAGGCCTATATTCTCTACTGATAACATGAGTTCAGACAAACACAAGATGGAAAGGTTCCTTCATCCTGG CCGCTTTGCAATGGCATCAATTTATGCTCCAATTTCTTTTCCTCCTCAACCCTTGATAGCTCTGAAGAAGGGGCAAGGAGATAGTGCTCCAACAGTTGCT GCTGTTGGATCCTTGAGAAGCATTAATCCGGACAGGATAGTACTGAAAAAAATTATATTAACTGGCTATCCTCAACGGGTATCAAAACGGAAGGCTACTG TAAGATACATGTTCCATAGCCCAGATGATGTCAGATGGTTCAAGCCTGTGGAGGTGTGGTCGAAGAATGGCCGCCGTGGTCGAATCAGGGAACCTGTTGG TACTCACGGTGCTATGAAGTGCATGTTTGATGGCATCCTACAGCAGAGCGACACTGTCTGCATGAGCTTGTACAAGCGTGCATATCCCAAGTGGCCGGAG CACCGTTACCCTATGGTGGATGCTTGA
AA sequence Show only first row Show all	>Lus10030752 pacid=23155405 polypeptide=Lus10030752 locus=Lus10030752.g ID=Lus10030752.BGIv1.0 annot-version=v1.0 MGGSRIQVNKAHKTRFTSKSTRNLHKTSLKDKNRIAKSDSNVAKGGRAARLQLNKMLREHNRAAVLKEKRAASGSTSPPRVIVLFGLSESVDVDSLDVDL SNVLSSQNGGHASSAIASPEFKMRATVLKAPHGDLVSCMEMAKVADLIAFVVSADSFCADGSPDFIDSFGDQCLSVFRSLGLPSTAVLIRGLPLELKWRS EAKKICASCLAGEFPEDCKFYPADTKYDLRKFLSLFKEQRLTVPHWRHQRPYLMSQKVDVVADSSNMHNCTLLLTGYLRARSLSVNQLVHVSGAGDFQQL KIEVLRDPSPLNLRKEPDAMDAEELLDTEVIRTLVPDSMAQEPLLVENIPDPLDREQTYPTKKELEEAEKKLEERKKHQKHKFPKKKVVPQGTSEYQATW IVDSSDEEGPDGESDIDDSMMVDERDDHYPGQEDINDNGIKDDQASLHLRDIDGDTETDSIMPEVENLTREQVEDEIRRIKKAHADDEEFPDEVDTPLDT PAKMRFAKYRGLKSFRTSSWDPKESLPVDYSRIFAFDNFQRTQKHVLAKALANDQVQANDQVQADDCVQTGQYVRLHIKEVPMHIGRKIYELAKVVPLVA SGLLQHESKMSVLHFSIKKHDSYEAPIKAKEELLFHVGFRQFVARPIFSTDNMSSDKHKMERFLHPGRFAMASIYAPISFPPQPLIALKKGQGDSAPTVA AVGSLRSINPDRIVLKKIILTGYPQRVSKRKATVRYMFHSPDDVRWFKPVEVWSKNGRRGRIREPVGTHGAMKCMFDGILQQSDTVCMSLYKRAYPKWPE HRYPMVDA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G42440			unknown protein		Lus10030752 [exp]	0	1
AT5G48120			ARM repeat superfamily protein...		Lus10011436 [exp]	1.4	0.9397
AT4G35910			Adenine nucleotide alpha hydro...		Lus10018066 [exp]	2.4	0.9199
AT5G52820			WD-40 repeat family protein / ...		Lus10029493 [exp]	2.4	0.9306
AT5G52820			WD-40 repeat family protein / ...		Lus10039597 [exp]	3.7	0.9158
AT2G21440			RNA-binding (RRM/RBD/RNP motif...		Lus10022044 [exp]	3.7	0.9355
AT1G52980		AtNug2	nuclear/nucleolar GTPase 2, GT...		Lus10021017 [exp]	4.5	0.9215
AT4G38890			FMN-linked oxidoreductases sup...		Lus10035460 [exp]	6.0	0.9222
AT5G38730			Tetratricopeptide repeat (TPR)...		Lus10032174 [exp]	7.6	0.8678
AT1G24090			RNase H family protein (.1)		Lus10020869 [exp]	8.5	0.9115
AT5G64580		EMB3144	EMBRYO DEFECTIVE 3144, AAA-typ...		Lus10020879 [exp]	8.8	0.9051

Compare expression of checked genes

Lus10030752 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.