Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63610 383 / 4e-133 unknown protein AT2G14910 92 / 9e-21 unknown protein AT5G14970 88 / 2e-19 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013233 [exp] 532 / 0 AT1G63610 389 / 1e-135 unknown protein Lus10016008 [exp] 424 / 2e-149 AT1G63610 409 / 1e-143 unknown protein Lus10026601 [exp] 80 / 2e-16 AT2G14910 396 / 9e-137 unknown protein Lus10013888 [exp] 69 / 1e-12 AT2G14910 380 / 8e-130 unknown protein Lus10014506 [exp] 63 / 8e-11 AT5G14970 329 / 5e-111 unknown protein Lus10032180 [exp] 59 / 1e-09 AT5G14970 327 / 4e-111 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G250000 [exp] 393 / 2e-137 AT1G63610 441 / 7e-156 unknown protein Potri.002G011000 [exp] 386 / 1e-134 AT1G63610 431 / 3e-152 unknown protein Potri.009G092800 [exp] 90 / 7e-20 AT2G14910 421 / 9e-147 unknown protein Potri.001G298200 [exp] 78 / 8e-16 AT2G14910 419 / 1e-145 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030753 pacid=23155357 polypeptide=Lus10030753 locus=Lus10030753.g ID=Lus10030753.BGIv1.0 annot-version=v1.0 ATGAACTCTTTGACAGCGAAACCCTCAATTTGCATACCCAAATTAACTTCTTCTTCATATCTCAAATGGAATTGCCCCCAGTTGCGTTCTTCCGTGAGTT TTCCATGGACACTGAAGAAATTCAATGGCGGCGGTGGTGGAGTAGGAAGGTTAGTACTGAGAGTTCGAGCGAGTGGATCTTCCGGCGCTGAAGGTTCTTC TAATTCCTCCTCCAGCTCCATGCAGTCCGACGACGGTCTGAGAAGCAGGAGAGAAATCCTGTTGGATTATGTCAAGACTGTCCAGCCTGATTTCATGGAG CTGTTCTCCAAGCGTGCTTCACCACAAGTGGTTGATGCAATGCGGCAAACGGTGACCAATATGATTGGTTCTTTACCTCCCCAGTTCTTCACTGTGACTG TTAGCACTGTAGGTGAACATCTTGCCCAGCTTATGTACAGTGTTCTGATGACTGGTTACATGTTCAAGAATGCTCAATACCGGCTGGAGCTCCAAGAAAG CTTGGAGCAGGTTGCTCTTCCCGAGCCAAAAGAGAAGATGCTGGACGAGACAGATTATGCACCTGGTACGCAGAAGAATGTGACTGGTGATGTTATCAGG TGGAACAGCGTATCTGGTGCTGAAACAATAGATGCGAAGAAGTACATTGAAATTCTCGAGGCTGAGATAGAGGAGCTGAATCGGCAGGTTGGTAGGAAGT CTACATATGGCGGCAACGAGTTGCTTGATTACCTCAAGACCCTGGAACCCCAAAATTTGAAGGAGCTGACGAGTAGCGCTGGAGAAGATGTGGTTGTCGC AATGAACACGTTCATTAAGCGCCTTCTCGGGGTTGCAGATCCGGAAAAAGTTAAGGCAAGCCCCGCGGAGACAAGTGCAACTGAACTGGCTAAGCTGCTC TACTGGCTGATGGTGGTTGGGTACAGCATTCGGAACATCGAAGTTCGGTTCGACATGGAACGAGTACTGGGTTCGTCTCCGAAGTTGCCGGAGTTGCCTT CTGGAGATGCCGCTTAA
AA sequence Show only first row Show all	>Lus10030753 pacid=23155357 polypeptide=Lus10030753 locus=Lus10030753.g ID=Lus10030753.BGIv1.0 annot-version=v1.0 MNSLTAKPSICIPKLTSSSYLKWNCPQLRSSVSFPWTLKKFNGGGGGVGRLVLRVRASGSSGAEGSSNSSSSSMQSDDGLRSRREILLDYVKTVQPDFME LFSKRASPQVVDAMRQTVTNMIGSLPPQFFTVTVSTVGEHLAQLMYSVLMTGYMFKNAQYRLELQESLEQVALPEPKEKMLDETDYAPGTQKNVTGDVIR WNSVSGAETIDAKKYIEILEAEIEELNRQVGRKSTYGGNELLDYLKTLEPQNLKELTSSAGEDVVVAMNTFIKRLLGVADPEKVKASPAETSATELAKLL YWLMVVGYSIRNIEVRFDMERVLGSSPKLPELPSGDAA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63610			unknown protein		Lus10030753 [exp]	0	1
AT2G18630			Protein of unknown function (D...		Lus10040334 [exp]	3.5	0.7788
AT2G18630			Protein of unknown function (D...		Lus10023459 [exp]	4.9	0.7630
AT2G34500		CYP710A1	cytochrome P450, family 710, s...		Lus10042833 [exp]	7.1	0.7584
AT5G42130		AtMfl1	MitoFerrinLike1, Mitochondrial...		Lus10042796 [exp]	11.5	0.7005
AT4G32010	B3	HSL1, HSI2-L1, ...	VP1/ABI3-LIKE 2, HSI2-like 1 (...		Lus10025142 [exp]	17.3	0.7184
AT5G12470			Protein of unknown function (D...		Lus10009956 [exp]	21.6	0.7241
AT2G47470		ATPDI11, ATPDIL...	UNFERTILIZED EMBRYO SAC 5, MAT...		Lus10029854 [exp]	24.2	0.5826
AT1G76240			Arabidopsis protein of unknown...		Lus10012275 [exp]	27.9	0.7191
AT5G59350			unknown protein		Lus10005456 [exp]	37.3	0.6696
AT1G25550	GARP		myb-like transcription factor ...		Lus10041485 [exp]	43.4	0.6669

Compare expression of checked genes

Lus10030753 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.