Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40830 302 / 5e-102 RHC1A RING-H2 finger C1A (.1.2.3) AT3G56580 260 / 8e-86 RING/U-box superfamily protein (.1.2.3) AT3G19950 159 / 2e-46 RING/U-box superfamily protein (.1) AT3G10815 133 / 8e-38 RING/U-box superfamily protein (.1) AT1G60360 132 / 5e-36 RING/U-box superfamily protein (.1) AT3G46620 127 / 1e-33 zinc finger (C3HC4-type RING finger) family protein (.1) AT1G55530 125 / 2e-33 RING/U-box superfamily protein (.1) AT2G39720 124 / 2e-32 RHC2A RING-H2 finger C2A (.1) AT3G13430 116 / 3e-30 RING/U-box superfamily protein (.1.2.3) AT5G56340 117 / 6e-30 ATCRT1 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013235 [exp] 501 / 0 AT2G40830 334 / 7e-115 RING-H2 finger C1A (.1.2.3) Lus10003698 [exp] 303 / 7e-103 AT2G40830 263 / 5e-87 RING-H2 finger C1A (.1.2.3) Lus10001582 [exp] 164 / 5e-50 AT2G40830 178 / 2e-55 RING-H2 finger C1A (.1.2.3) Lus10010179 [exp] 145 / 1e-41 AT3G19950 285 / 6e-96 RING/U-box superfamily protein (.1) Lus10025612 [exp] 138 / 4e-38 AT1G60360 234 / 7e-75 RING/U-box superfamily protein (.1) Lus10040278 [exp] 134 / 1e-37 AT5G59550 224 / 2e-71 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10004712 [exp] 136 / 3e-37 AT5G59550 294 / 6e-97 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10028063 [exp] 134 / 2e-36 AT1G60360 224 / 9e-71 RING/U-box superfamily protein (.1) Lus10024372 [exp] 118 / 1e-30 AT5G59550 197 / 5e-60 zinc finger (C3HC4-type RING finger) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G029300 [exp] 377 / 4e-132 AT2G40830 317 / 9e-108 RING-H2 finger C1A (.1.2.3) Potri.006G032100 [exp] 375 / 5e-131 AT2G40830 327 / 1e-111 RING-H2 finger C1A (.1.2.3) Potri.007G074014 [exp] 159 / 1e-46 AT3G19950 278 / 5e-93 RING/U-box superfamily protein (.1) Potri.012G036700 [exp] 156 / 3e-45 AT3G19950 273 / 5e-90 RING/U-box superfamily protein (.1) Potri.005G090500 [exp] 154 / 5e-45 AT3G19950 279 / 4e-93 RING/U-box superfamily protein (.1) Potri.015G028400 [exp] 152 / 1e-43 AT3G19950 256 / 2e-83 RING/U-box superfamily protein (.1) Potri.002G085800 [exp] 140 / 1e-38 AT1G60360 233 / 4e-74 RING/U-box superfamily protein (.1) Potri.009G034800 [exp] 139 / 2e-38 AT3G46620 236 / 8e-75 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.006G087800 [exp] 138 / 2e-38 AT5G59550 258 / 1e-83 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.001G243300 [exp] 132 / 9e-36 AT3G46620 239 / 8e-76 zinc finger (C3HC4-type RING finger) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10030755 pacid=23155218 polypeptide=Lus10030755 locus=Lus10030755.g ID=Lus10030755.BGIv1.0 annot-version=v1.0 ATGTCAAGCAGCAGAAACACCCACTGGTGCTATAGATGCAGGAGAGGAATCTACATAAGAGGGCAAGATTCCGTTTGCCCATACTGTGATGGCGGATTCA TCCAAGAACTCGAGGAAATGAGCCACACCGGCCCTCTGGATTACTTCGGACACGCCAGTGACATTGGCCATGACCACAGGTTCGGCCTCATGGAAGCCTT TTCAGCCCTTGTACGCCAAAGAGCTAACGACCACGGAGCGAGGGCTAGATCTGACCCCGTACCTGAACACGGTGCTGGGTTCAGTCCGCTGTTGATTTTC GGCGGCCAGATCCCCGTTCGCCTATCCGGAAATGGTGGTTTTGACACCCTCTTCCCCGGAGCGCCCGGAATCGGTTTTGCCAGGGGCAATGGTGGCGATT ACTTCATCGGTCCTGGACTAGAAGAGTTGTTCGAGCAGCTCTCGACGAACGACAGGCGCGGACCTGCACCGGCATCCAGATCGTCAATCGAGGCTTTGCC GACGATCAAGATAACTCAAAGGCACCTTCGTTCCGATTCGCATTGTCCGGTCTGCAAGGACCAATTCGAAGCCGGATCTGAAGCGAGGCAAATGCCTTGT AACCACATGTATCACTCGGACTGCATAGTTCCGTGGCTCGAACAGCATAATTCGTGCCCGGTCTGTCGGCAGGAGCTTCCTCTGCAGGGCGGTTCGAGTA GTAGCAGCGGCAGTTTCCCGAGCTCAAGTTCGCGAACTAGGAGCAGCAGAAGGGAGAGCGGGCGAGAAGGAAGAAGAAACCCTTTCTCGAGTTTGTGGCC GTTCCGAAGCTCGAGCTCGAGTTCTAACCAGAGCAGGACGAGTGGGAGCAGCTCGACTTCGACGACGATGAACGAGAATGCTCATCACCACCAGGTGGGT TATTCGGGGTGGCCATTTGACTAA
AA sequence Show only first row Show all	>Lus10030755 pacid=23155218 polypeptide=Lus10030755 locus=Lus10030755.g ID=Lus10030755.BGIv1.0 annot-version=v1.0 MSSSRNTHWCYRCRRGIYIRGQDSVCPYCDGGFIQELEEMSHTGPLDYFGHASDIGHDHRFGLMEAFSALVRQRANDHGARARSDPVPEHGAGFSPLLIF GGQIPVRLSGNGGFDTLFPGAPGIGFARGNGGDYFIGPGLEELFEQLSTNDRRGPAPASRSSIEALPTIKITQRHLRSDSHCPVCKDQFEAGSEARQMPC NHMYHSDCIVPWLEQHNSCPVCRQELPLQGGSSSSSGSFPSSSSRTRSSRRESGREGRRNPFSSLWPFRSSSSSSNQSRTSGSSSTSTTMNENAHHHQVG YSGWPFD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40830		RHC1A	RING-H2 finger C1A (.1.2.3)		Lus10030755 [exp]	0	1
AT2G40830		RHC1A	RING-H2 finger C1A (.1.2.3)		Lus10013235 [exp]	1.4	0.7915
AT3G51040		RTH	RTE1-homolog (.1.2.3)		Lus10041800 [exp]	5.7	0.8003
AT1G33490			unknown protein		Lus10039157 [exp]	12.8	0.7647
AT3G51040		RTH	RTE1-homolog (.1.2.3)		Lus10028350 [exp]	15.9	0.7538
AT5G02420			unknown protein		Lus10038653 [exp]	21.5	0.6965
AT2G37035			unknown protein		Lus10013807 [exp]	23.9	0.6966
AT2G29700		ATPH1	pleckstrin homologue 1 (.1)		Lus10018222 [exp]	24.5	0.6734
AT5G06370			NC domain-containing protein-r...		Lus10029402 [exp]	29.0	0.7270
AT3G57990			unknown protein		Lus10016270 [exp]	29.6	0.6507
AT4G17100			unknown protein		Lus10001086 [exp]	30.9	0.6975

Compare expression of checked genes

Lus10030755 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.