Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02650 452 / 2e-153 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G05670 113 / 4e-26 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT4G11690 112 / 4e-26 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G18390 107 / 9e-25 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63400 104 / 1e-23 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G06580 103 / 3e-23 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62680 102 / 6e-23 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G41170 100 / 2e-22 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G62914 100 / 3e-22 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G62910 100 / 3e-22 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013236 [exp] 919 / 0 AT3G02650 489 / 7e-168 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027916 [exp] 110 / 3e-25 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10042529 [exp] 107 / 6e-24 AT5G65560 498 / 1e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012068 [exp] 106 / 1e-23 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027914 [exp] 104 / 3e-23 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012037 [exp] 101 / 3e-22 AT2G15630 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012139 [exp] 101 / 4e-22 AT5G59900 987 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027829 [exp] 100 / 5e-22 AT3G59040 703 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10039056 [exp] 100 / 1e-21 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G361500 [exp] 522 / 0 AT3G02650 533 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G050240 [exp] 125 / 2e-30 AT1G12700 465 / 1e-155 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G032600 [exp] 119 / 3e-28 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050500 [exp] 117 / 1e-27 AT1G12700 523 / 2e-178 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G038400 [exp] 115 / 7e-27 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050180 [exp] 114 / 1e-26 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G034200 [exp] 114 / 1e-26 AT1G12700 511 / 6e-174 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G034400 [exp] 111 / 1e-25 AT3G22470 476 / 1e-161 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046100 [exp] 111 / 1e-25 AT1G12700 512 / 1e-173 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050300 [exp] 109 / 5e-25 AT1G12700 466 / 5e-156 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10030756 pacid=23155384 polypeptide=Lus10030756 locus=Lus10030756.g ID=Lus10030756.BGIv1.0 annot-version=v1.0 ATGTGGAGGACCGTCGCCGCCAAATCCGGTAGTAGGGTTACGCAAATCCTTGACAAGTTACTTCTCCGACCTCAATCTCATTCATCTCACCACCTCCGCA GCAGATTTCTCTCTATTTCCTCATCCGCTACCCCAACCCTAGAAGAAACCCCGCCGCCGCCTACGTCCCACCCTGCGGCGGAGGGGTTCGGCTTTCCCTC TGCTAGTGTTGATGACGAACTATTAGGTCAGGAGGATTCTGATGAAATAGCTGCTGCCGATAGTGAGCAGTTGAACGAAGCTGATAATTTCAACTCCGTC GATGAATTCGGAAATGCTCGTGAAATCGATCCGGAGAAGCTGGAGATGGTTCTGTCTCTGCTTCAGAGCAGCGCCGATGGATCTCTCGAGTCGACGCTGA ACAGCTTGGAGTTAGATCTGCACGAAGAGTTCGTGATGAGAGTGGCCGAAACTCCAAACCTTTTGGGGGAGAATCTGCTTAGTTTTTTCAACTGGATTCG AAACAAGCCTGGTGGTTTAGTGTTGTTCACTTCTCAATCTCTCAACGCTCTTGTTCAGGCAATTTGCAGCGACTGTGTAATGCGGAAGAAGAATGCTTAC GCACTGTGGGACTTGATCTTGGAAGTTGGTAGTGCTAAGGCAGATGATGATAATGCTACGATCCTGAATGCTAAAATGCTTAACCCGCTGATCGAGCTAT TATCGAAGCTGGGAAAGGCGAAAGTAGCTTACGAGATTTTCAACAAGCTAGAGGAGTTAGGCTGTGTCCCCGATTCGGATACATACTACTTCACGATCGA GGCGTTATGCCGAAGATCATTCTTCGACTGGGCGTGGACGGTTTGCGAGAAAATGCTGAACGCGGAAGCTCTCCCCAAGGATCCTAACCATGTCGGTAAG ATCGTAGCGTGGTTCTGCAGAGCGAATAGGCCGAAAGATGCACATTCGGTTTTCGTTCTAGCGAAGGAGAAGATTCCGCAATCGGTTACGAACTACTTGG TTGCTTCGCTCGCTCACAAGGACGAAACCGTCAAATTAGCACTCGAGATGCTGGACGGCTATACCGGAGTATCTCGAAAGTACGCAATCAAACCTTTCTC GTTGGTCATGCACGGCTTGTGCAGGTCGAAAGATGTTACCGAGGCGAAGTCTTTACTTACCAAGATGATTTCCGACGGTCCGCCTCCCGGGAACGCAATC TTCAACTTGCTGATCAATGCTTACTCAAAAACCGGGAATATGCTCGGAGCGATGGGGATGATGAAACTGATGAAGAAGAGAGGGCTGAAACCAGACGTGT ATACTTACACGGTCGCGATGAGTGGCTACGTAAGCGGAGGCTGCATGGACGAGGCTCGAAGGTTACTCGCGGAAGCGAAAAAGAAGCACACGAAGCTGAG TCCCGTTACTTACCACACACTGATTCGAGGATACTGCAAACTCGAACAGTACGACGAGGCTTTGTCGTTGCTGGGGGAGATGAAGGAGTTTGGTGTTGAG GCGAGTGTGGATGAATATACTAAGCTGATTCAGTCTCTTTGTTTGAAGGCGTTGGATTGGAGGAGAGCGGAAGAGCTCCTGGGACAGATGAAGGAGAGTG GATTGCATCTGAATGGGATTACGAAGGGGCTCATCAGTGCTGTCAAGGAGCTCGACGAGGAGGAGAAATTGAGCATTGCAGCGTAA
AA sequence Show only first row Show all	>Lus10030756 pacid=23155384 polypeptide=Lus10030756 locus=Lus10030756.g ID=Lus10030756.BGIv1.0 annot-version=v1.0 MWRTVAAKSGSRVTQILDKLLLRPQSHSSHHLRSRFLSISSSATPTLEETPPPPTSHPAAEGFGFPSASVDDELLGQEDSDEIAAADSEQLNEADNFNSV DEFGNAREIDPEKLEMVLSLLQSSADGSLESTLNSLELDLHEEFVMRVAETPNLLGENLLSFFNWIRNKPGGLVLFTSQSLNALVQAICSDCVMRKKNAY ALWDLILEVGSAKADDDNATILNAKMLNPLIELLSKLGKAKVAYEIFNKLEELGCVPDSDTYYFTIEALCRRSFFDWAWTVCEKMLNAEALPKDPNHVGK IVAWFCRANRPKDAHSVFVLAKEKIPQSVTNYLVASLAHKDETVKLALEMLDGYTGVSRKYAIKPFSLVMHGLCRSKDVTEAKSLLTKMISDGPPPGNAI FNLLINAYSKTGNMLGAMGMMKLMKKRGLKPDVYTYTVAMSGYVSGGCMDEARRLLAEAKKKHTKLSPVTYHTLIRGYCKLEQYDEALSLLGEMKEFGVE ASVDEYTKLIQSLCLKALDWRRAEELLGQMKESGLHLNGITKGLISAVKELDEEEKLSIAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02650			Tetratricopeptide repeat (TPR)...		Lus10030756 [exp]	0	1
AT3G57490			Ribosomal protein S5 family pr...		Lus10027358 [exp]	14.0	0.9032
AT5G11780			unknown protein		Lus10040547 [exp]	16.4	0.8763
AT1G24510			TCP-1/cpn60 chaperonin family ...		Lus10006240 [exp]	16.7	0.8826
AT3G02650			Tetratricopeptide repeat (TPR)...		Lus10013236 [exp]	18.3	0.8996
AT3G09630			Ribosomal protein L4/L1 family...		Lus10026476 [exp]	19.5	0.9022
AT3G25230		ROF1, ATFKBP62	FK506 BINDING PROTEIN 62, rota...		Lus10038216 [exp]	20.8	0.8726
AT2G04390			Ribosomal S17 family protein (...		Lus10004208 [exp]	25.8	0.8912
AT3G18190			TCP-1/cpn60 chaperonin family ...		Lus10026151 [exp]	27.6	0.8829
AT5G43960			Nuclear transport factor 2 (NT...		Lus10024953 [exp]	28.8	0.8868
AT2G01720			Ribophorin I (.1)		Lus10040410 [exp]	32.0	0.8899

Compare expression of checked genes

Lus10030756 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.