Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14810 601 / 0 semialdehyde dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013239 [exp] 682 / 0 AT1G14810 622 / 0.0 semialdehyde dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G135700 [exp] 628 / 0 AT1G14810 617 / 0.0 semialdehyde dehydrogenase family protein (.1) Potri.010G105300 [exp] 627 / 0 AT1G14810 629 / 0.0 semialdehyde dehydrogenase family protein (.1) Potri.010G105000 [exp] 622 / 0 AT1G14810 596 / 0.0 semialdehyde dehydrogenase family protein (.1) Potri.004G145700 [exp] 43 / 0.0002 AT2G19940 618 / 0.0 oxidoreductases, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor;copper ion binding (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01118 [flax] [poplar] Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain CL0139 [flax] [poplar] GADPH_aa-bio_dh PF02774 [flax] [poplar] Semialdhyde_dhC Semialdehyde dehydrogenase, dimerisation domain
Representative CDS sequence Show only first row Show all	>Lus10030759 pacid=23155386 polypeptide=Lus10030759 locus=Lus10030759.g ID=Lus10030759.BGIv1.0 annot-version=v1.0 ATGTCCCTCCAGGAAAACGCCCCATCCCTCGCCGTCGTCGGAGTCACGGGAGCCGTCGGACAGGAGTTCCTCTCTGTCCTCTCCGACCGCGACTTCCCGT ATCGGTCAATCAAGATGCTCGCCTCCAAGCGCTCCGCGGGAAAGCAGATGACTTTCCTGGACAGGAGCTATACGGTGGAGGAGCTGACCGCCGATAGCTT CGACGGCGTCGATATAGCTCTGTTTAGCGCCGGCGGGTCGATTAGCAAGGCGTTTGGGCCGGCGGCGGTGGAGAAGGGAACCATTGTGGTGGATAACAGC TCGGCGTTTAGGATGGTTGATGGAATTCCTCTTGTGATTCCTGAAGTGAATCCTGAGGCTATGGATGGGATTAAAGTTGGGATGGGGAAAGGGGCTTTGA TTGCTAACCCTAATTGTTCCACCATTATCTGCTTGATGGCTGCCACTCCTTTGCACAGACGTGCCAAGGTGCTACGCATGATTGTTAGTACATATCAGGC GGCTAGTGGTGCTGGTGCGGCCGCCATGGAAGAGCTTGAACTGCAGACTCGTGAGGTGCTGGAAGGATCTCCACCCACTTGTAACATATTCAGTCAGCAG TATGCTTTTAATCTGTTTTCACACAATGCCCCTGTTCAAGAAAATGGATACAATGAAGAAGAGATGAAATTGGTGAAAGAGACCAGAAAAATCTGGAGTG ACTTGGATGTTAAGGTCACTGCTACCTGTATACGAGTCCCTGTCATGCGTGCACATGCTGAGAGTATTAACCTCCAATTCGAGAAGCCACTTGACGAGGA TACAGCAAGGGAGATTCTGAAGAATGCGGCAGGAGTTGTGGTCATCGACGACCGTGCATCCAACCATTTCCCCACACCATTGGAAGTATCAAACAAGGAC GATGTGGCAGTGGGCAGAATCCGTCGAGATCTCTCTCAAGAAGGGAAACACGGGCTGGACATCTTCGTATGCGGGGATCAAATACGAAAGGGAGCAGCCC TGAATGCCATTCAGATTGCAGAGATGCTGCTATAG
AA sequence Show only first row Show all	>Lus10030759 pacid=23155386 polypeptide=Lus10030759 locus=Lus10030759.g ID=Lus10030759.BGIv1.0 annot-version=v1.0 MSLQENAPSLAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQMTFLDRSYTVEELTADSFDGVDIALFSAGGSISKAFGPAAVEKGTIVVDNS SAFRMVDGIPLVIPEVNPEAMDGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVLRMIVSTYQAASGAGAAAMEELELQTREVLEGSPPTCNIFSQQ YAFNLFSHNAPVQENGYNEEEMKLVKETRKIWSDLDVKVTATCIRVPVMRAHAESINLQFEKPLDEDTAREILKNAAGVVVIDDRASNHFPTPLEVSNKD DVAVGRIRRDLSQEGKHGLDIFVCGDQIRKGAALNAIQIAEMLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14810			semialdehyde dehydrogenase fam...		Lus10030759 [exp]	0	1
AT1G59990		RH22, EMB3108	RNA helicase 22, EMBRYO DEFECT...		Lus10029196 [exp]	3.5	0.8868
AT1G60640			unknown protein		Lus10033578 [exp]	4.5	0.8845
AT1G64600			methyltransferases;copper ion ...		Lus10003205 [exp]	5.5	0.8781
AT5G16620		PDE120, TIC40, ...	pigment defective embryo 120, ...		Lus10004053 [exp]	9.4	0.8702
AT5G54580			RNA-binding (RRM/RBD/RNP motif...		Lus10003593 [exp]	9.8	0.8506
AT1G72040			P-loop containing nucleoside t...		Lus10008257 [exp]	11.5	0.8697
AT1G06220		GFA1, CLO, MEE5	MATERNAL EFFECT EMBRYO ARREST ...		Lus10043478 [exp]	12.6	0.8864
AT5G18440		AtNUFIP	nuclear FMRP-interacting prote...		Lus10033402 [exp]	15.7	0.8308
AT1G64600			methyltransferases;copper ion ...		Lus10017309 [exp]	16.6	0.8568
AT4G25730			FtsJ-like methyltransferase fa...		Lus10040439 [exp]	17.1	0.8863

Compare expression of checked genes

Lus10030759 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.