Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14720 451 / 4e-160 ATXTH28, EXGT-A2, XTR2 xyloglucan endotransglycosylase related 2, ENDOXYLOGLUCAN TRANSFERASE A2, xyloglucan endotransglucosylase/hydrolase 28 (.1) AT2G01850 445 / 8e-158 ATXTH27, EXGT-A3 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 27, endoxyloglucan transferase A3 (.1) AT1G32170 374 / 1e-129 XTH30, XTR4 xyloglucan endotransglycosylase 4, xyloglucan endotransglucosylase/hydrolase 30 (.1) AT4G18990 343 / 1e-117 XTH29, XTR13 xyloglucan endotransglucosylase/hydrolase 29 (.1) AT1G10550 253 / 2e-82 XTH33, XET xyloglucan:xyloglucosyl transferase 33 (.1) AT4G13090 241 / 3e-78 XTH2 xyloglucan endotransglucosylase/hydrolase 2 (.1) AT4G13080 224 / 1e-71 XTH1 xyloglucan endotransglucosylase/hydrolase 1 (.1) AT5G13870 213 / 3e-67 EXGT-A4, XTH5, XTR12 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) AT3G25050 212 / 5e-67 XTH3 xyloglucan endotransglucosylase/hydrolase 3 (.1) AT2G36870 208 / 2e-65 XTH32 xyloglucan endotransglucosylase/hydrolase 32 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013240 [exp] 650 / 0 AT2G01850 456 / 2e-162 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 27, endoxyloglucan transferase A3 (.1) Lus10029000 [exp] 535 / 0 AT1G14720 457 / 1e-162 xyloglucan endotransglycosylase related 2, ENDOXYLOGLUCAN TRANSFERASE A2, xyloglucan endotransglucosylase/hydrolase 28 (.1) Lus10010427 [exp] 371 / 2e-128 AT1G32170 462 / 5e-164 xyloglucan endotransglycosylase 4, xyloglucan endotransglucosylase/hydrolase 30 (.1) Lus10012115 [exp] 313 / 8e-106 AT1G32170 401 / 9e-141 xyloglucan endotransglycosylase 4, xyloglucan endotransglucosylase/hydrolase 30 (.1) Lus10029165 [exp] 252 / 3e-82 AT1G10550 405 / 5e-143 xyloglucan:xyloglucosyl transferase 33 (.1) Lus10013000 [exp] 251 / 6e-82 AT1G10550 397 / 9e-140 xyloglucan:xyloglucosyl transferase 33 (.1) Lus10021422 [exp] 218 / 6e-69 AT2G36870 417 / 4e-148 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10041341 [exp] 214 / 1e-67 AT2G36870 421 / 2e-149 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10016144 [exp] 214 / 1e-67 AT2G36870 416 / 1e-147 xyloglucan endotransglucosylase/hydrolase 32 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G102300 [exp] 477 / 2e-170 AT1G14720 470 / 7e-168 xyloglucan endotransglycosylase related 2, ENDOXYLOGLUCAN TRANSFERASE A2, xyloglucan endotransglucosylase/hydrolase 28 (.1) Potri.008G138400 [exp] 475 / 7e-170 AT1G14720 467 / 2e-166 xyloglucan endotransglycosylase related 2, ENDOXYLOGLUCAN TRANSFERASE A2, xyloglucan endotransglucosylase/hydrolase 28 (.1) Potri.001G136100 [exp] 386 / 3e-134 AT1G32170 469 / 6e-167 xyloglucan endotransglycosylase 4, xyloglucan endotransglucosylase/hydrolase 30 (.1) Potri.003G097300 [exp] 375 / 3e-130 AT1G32170 436 / 8e-154 xyloglucan endotransglycosylase 4, xyloglucan endotransglucosylase/hydrolase 30 (.1) Potri.009G163850 [exp] 320 / 2e-109 AT2G01850 319 / 6e-109 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 27, endoxyloglucan transferase A3 (.1) Potri.014G115000 [exp] 254 / 6e-83 AT1G10550 367 / 9e-128 xyloglucan:xyloglucosyl transferase 33 (.1) Potri.002G244200 [exp] 225 / 5e-72 AT4G13090 321 / 3e-110 xyloglucan endotransglucosylase/hydrolase 2 (.1) Potri.009G006600 [exp] 213 / 2e-67 AT3G44990 407 / 3e-144 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 31, xyloglucan endo-transglycosylase-related 8 (.1) Potri.006G122900 [exp] 207 / 5e-65 AT2G36870 478 / 4e-172 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Potri.016G098600 [exp] 206 / 1e-64 AT2G36870 477 / 1e-171 xyloglucan endotransglucosylase/hydrolase 32 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00722 [flax] [poplar] Glyco_hydro_16 Glycosyl hydrolases family 16 CL0004 [flax] [poplar] Concanavalin PF06955 [flax] [poplar] XET_C Xyloglucan endo-transglycosylase (XET) C-terminus
Representative CDS sequence Show only first row Show all	>Lus10030760 pacid=23155420 polypeptide=Lus10030760 locus=Lus10030760.g ID=Lus10030760.BGIv1.0 annot-version=v1.0 ATGGGTAGTAGCTCTGTGTTATTGGGTTGTTTCCTTGCTGTTCTGCTTGTTTCCGCTTCTGGGTTCCACCATGGAAACTTGGCTATTGTTCCGTTTGATG AAGGGTACACCCAGCTTTTTGGGGAAGACAATCTGGTTGTTCACAAGGATGGAAACGCCGTCCACTTGATGCTTGATGAAAGAACTGGGTCTGGATTTGT GTCGCAGGAGCTTTACTCACACGGCTACTTCAGTGCTTCGATTAAGCTCCCAGCTGATTACACAGCTGGGGTTGTGGTTGCTTTCTATATGTCTAATGGC GACACGTACGAGAAGAACCACGATGAGATTGACTTCGAGTTCTTGGGGAACATCAGGGGCAAAGATTGGAGGATTCAGACGAACATATATGGTAATGGAA GCACAAGCTCAGGGAGAGAAGAGAGGTACAGCCTCTGGTTTGATCCTTCTGATGATTTCCATCGATATTCAATCCTCTGGACTGATTCGCACATCATATT CTACGTGGATGATGTCCCGATTCGAGAAGTGGTGAGAACTGAATCGATGGGGGGAGACTTCCCGTCGAAGCCGATGTCTCTGTACGCGACGATATGGGAC GGATCGACATGGGCGACGAACGGAGGGAAGTACAAGGTGAATTACAACTACGCCCCTTACACGTCGGAATTCGAACAATTCGTGCTCCACGGATGCGCTG TCGATCCGACGGAGCACAGTGCGTCGCACTGTGACACAACCTACGAAAAACTGTCGAAGTCCGAGTTCATCTCGACCCCGCAGAGGAGCAGGATGGACAG GTTCAGGACCAAGTACATGACGTACTCGTACTGCTACGATCGCATTCGGTACAATGTCCCCTTGCCGGAATGTGTGATCAATCCCTCGGAGGCTCAGAGG CTGAAGACGTTCGATCCGGTCACTTTCGGTGGAGGTAGGGCCCGACGACACGGGAGGAGGCACCACCGGAAGACAGTCCATGGTGAGGAGGCCATGTCTA TGTGA
AA sequence Show only first row Show all	>Lus10030760 pacid=23155420 polypeptide=Lus10030760 locus=Lus10030760.g ID=Lus10030760.BGIv1.0 annot-version=v1.0 MGSSSVLLGCFLAVLLVSASGFHHGNLAIVPFDEGYTQLFGEDNLVVHKDGNAVHLMLDERTGSGFVSQELYSHGYFSASIKLPADYTAGVVVAFYMSNG DTYEKNHDEIDFEFLGNIRGKDWRIQTNIYGNGSTSSGREERYSLWFDPSDDFHRYSILWTDSHIIFYVDDVPIREVVRTESMGGDFPSKPMSLYATIWD GSTWATNGGKYKVNYNYAPYTSEFEQFVLHGCAVDPTEHSASHCDTTYEKLSKSEFISTPQRSRMDRFRTKYMTYSYCYDRIRYNVPLPECVINPSEAQR LKTFDPVTFGGGRARRHGRRHHRKTVHGEEAMSM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14720		ATXTH28, EXGT-A...	xyloglucan endotransglycosylas...		Lus10030760 [exp]	0	1
AT1G44770			unknown protein		Lus10034500 [exp]	5.7	0.9460
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10018992 [exp]	7.0	0.9345
AT2G36320			A20/AN1-like zinc finger famil...		Lus10003246 [exp]	8.4	0.9358
AT5G49710			unknown protein		Lus10015965 [exp]	9.4	0.9424
AT4G30340		ATDGK7	diacylglycerol kinase 7 (.1)		Lus10015514 [exp]	10.8	0.9381
AT4G29890			choline monooxygenase, putativ...		Lus10008571 [exp]	11.2	0.9347
AT3G30390			Transmembrane amino acid trans...		Lus10035140 [exp]	12.3	0.9340
AT5G46180		DELTA-OAT	ornithine-delta-aminotransfera...		Lus10038510 [exp]	12.6	0.9305
AT1G65320			Cystathionine beta-synthase (C...		Lus10011457 [exp]	13.0	0.8861
AT1G43130		LCV2	like COV 2 (.1)		Lus10018869 [exp]	13.1	0.9202

Compare expression of checked genes

Lus10030760 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.