Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G25220 362 / 1e-126 WEI7, TRP4, ASB1 WEAK ETHYLENE INSENSITIVE7, TRYPTOPHAN BIOSYNTHESIS 4, anthranilate synthase beta subunit 1 (.1.2) AT5G57890 361 / 4e-126 Glutamine amidotransferase type 1 family protein (.1) AT1G25155 357 / 2e-125 Glutamine amidotransferase type 1 family protein (.1) AT1G24909 357 / 2e-125 Glutamine amidotransferase type 1 family protein (.1) AT1G25083 357 / 2e-125 Glutamine amidotransferase type 1 family protein (.1) AT1G24807 348 / 2e-121 Glutamine amidotransferase type 1 family protein (.1) AT2G28880 104 / 8e-25 ADCS, EMB1997 embryo defective 1997, aminodeoxychorismate synthase, para-aminobenzoate (PABA) synthase family protein (.1) AT3G27740 71 / 1e-13 VEN6, CARA VENOSA 6, carbamoyl phosphate synthetase A (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013241 [exp] 500 / 0 AT1G25220 368 / 2e-129 WEAK ETHYLENE INSENSITIVE7, TRYPTOPHAN BIOSYNTHESIS 4, anthranilate synthase beta subunit 1 (.1.2) Lus10036525 [exp] 106 / 3e-25 AT2G28880 1026 / 0.0 embryo defective 1997, aminodeoxychorismate synthase, para-aminobenzoate (PABA) synthase family protein (.1) Lus10041403 [exp] 105 / 4e-25 AT2G28880 1078 / 0.0 embryo defective 1997, aminodeoxychorismate synthase, para-aminobenzoate (PABA) synthase family protein (.1) Lus10018639 [exp] 69 / 1e-12 AT3G27740 676 / 0.0 VENOSA 6, carbamoyl phosphate synthetase A (.1.2) Lus10039874 [exp] 67 / 4e-12 AT3G27740 678 / 0.0 VENOSA 6, carbamoyl phosphate synthetase A (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G138800 [exp] 396 / 8e-140 AT1G25220 404 / 2e-143 WEAK ETHYLENE INSENSITIVE7, TRYPTOPHAN BIOSYNTHESIS 4, anthranilate synthase beta subunit 1 (.1.2) Potri.010G102200 [exp] 392 / 3e-138 AT1G25220 401 / 1e-142 WEAK ETHYLENE INSENSITIVE7, TRYPTOPHAN BIOSYNTHESIS 4, anthranilate synthase beta subunit 1 (.1.2) Potri.010G221500 [exp] 104 / 8e-25 AT2G28880 1016 / 0.0 embryo defective 1997, aminodeoxychorismate synthase, para-aminobenzoate (PABA) synthase family protein (.1) Potri.003G080900 [exp] 71 / 1e-13 AT3G27740 647 / 0.0 VENOSA 6, carbamoyl phosphate synthetase A (.1.2) Potri.001G153400 [exp] 70 / 4e-13 AT3G27740 676 / 0.0 VENOSA 6, carbamoyl phosphate synthetase A (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0014 [flax] [poplar] Glutaminase_I PF00117 [flax] [poplar] GATase Glutamine amidotransferase class-I
Representative CDS sequence Show only first row Show all	>Lus10030761 pacid=23155229 polypeptide=Lus10030761 locus=Lus10030761.g ID=Lus10030761.BGIv1.0 annot-version=v1.0 ATGGCTGCAACTTTGGTCTCACGAGCTTCGCTAATCCAGTCAAAACCCTCAATCTCATTTAAAAACCAGCAGAGTCATAGTCTCCTCCTCCCTCAGCAGC TCTCTGTGCCATCAAGTACAGTGCTTTTCTCATCGTTTGTTCTTTTGTGGATTGGAATTGGAGGTGGTACTAATTTGTTTTCTTTCTTCTTTGAAGATTT TGCGACAAAGGGAAATGGATTGGCGGTGAGATGTTCGATTGCTGTCCCTGAAGCTGCTTCAAGGATTGGGGATTCAAATGGGAAAGGGGCGAAATCACCT GTCGTTGTGATTGACAATTATGACAGTTTCACTTACAATCTTTGTCAGTATATGGGAGAGCTGGGATGCGAATTTGAGGTCTACCGGAATGATGAGTTAA CTGTTGAAGAGTTGAAAAGGTGGAGGAAAAAGCCTAGAGGAGTGCTGATATCTCCAGGACCAGGGGCGCCCAAGGATTCTGGAATATCGTTGCAGACAGT TTTGGAGCTTGGACCTATTGTGCCCTTGTTTGGTGTGTGTATGGGTTTGCAGTGCATTGGCGAGGCATTTGGTGGAAAGATCGTGCGTTCTCCTTTTGGG GTCATGCATGGGAAAAGTTCACCGGTGTATTATGATGAGAAAGGAAAAGGCTTGTTCACTGGGTTACCGAACCCATTCAAAGCTGGCAGATATCACAGCC TTGTTATTGACCGAGACACCTTCCCGATTGACGAACTAGAAATCACTGCGTGGACTGAGGATGGGTTGATTATGGCTGCCCGTCACAAGAAGTACAAATA TCTGCAGGGAGTGCAGTTTCATCCTGAAAGCATTATAACCTCGGAAGGAAAGATCATCGTCCAGAACTTCCTCAAAATGGTCGAGGAGAAAGAGGCAGCC GACTCGAACAACAGCTGA
AA sequence Show only first row Show all	>Lus10030761 pacid=23155229 polypeptide=Lus10030761 locus=Lus10030761.g ID=Lus10030761.BGIv1.0 annot-version=v1.0 MAATLVSRASLIQSKPSISFKNQQSHSLLLPQQLSVPSSTVLFSSFVLLWIGIGGGTNLFSFFFEDFATKGNGLAVRCSIAVPEAASRIGDSNGKGAKSP VVVIDNYDSFTYNLCQYMGELGCEFEVYRNDELTVEELKRWRKKPRGVLISPGPGAPKDSGISLQTVLELGPIVPLFGVCMGLQCIGEAFGGKIVRSPFG VMHGKSSPVYYDEKGKGLFTGLPNPFKAGRYHSLVIDRDTFPIDELEITAWTEDGLIMAARHKKYKYLQGVQFHPESIITSEGKIIVQNFLKMVEEKEAA DSNNS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G25220		WEI7, TRP4, ASB...	WEAK ETHYLENE INSENSITIVE7, TR...		Lus10030761 [exp]	0	1
					Lus10033943 [exp]	2.0	0.8332
AT5G51410			LUC7 N_terminus domain-contain...		Lus10027212 [exp]	3.5	0.7930
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10017604 [exp]	5.5	0.7933
AT5G41850			alpha/beta-Hydrolases superfam...		Lus10021037 [exp]	8.7	0.8085
AT3G47490			HNH endonuclease (.1.2.3)		Lus10034462 [exp]	12.4	0.7914
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10043133 [exp]	23.2	0.7671
AT3G12620			Protein phosphatase 2C family ...		Lus10040346 [exp]	24.4	0.7315
AT3G21810	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10015103 [exp]	26.4	0.7483
AT4G11880	MADS	AGL14	AGAMOUS-like 14 (.1)		Lus10006716 [exp]	27.2	0.7738
AT1G31170		ATSRX	sulfiredoxin (.1.2.3.4)		Lus10038354 [exp]	29.7	0.7760

Compare expression of checked genes

Lus10030761 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.