Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01818 203 / 2e-64 PLATZ transcription factor family protein (.1) AT3G60670 119 / 9e-32 PLATZ transcription factor family protein (.1) AT2G12646 115 / 4e-30 PLATZ transcription factor family protein (.1) AT1G31040 111 / 1e-28 PLATZ transcription factor family protein (.1) AT4G17900 100 / 7e-25 PLATZ transcription factor family protein (.1.2) AT2G27930 99 / 1e-24 PLATZ transcription factor family protein (.1) AT5G46710 95 / 9e-23 PLATZ transcription factor family protein (.1) AT1G43000 92 / 9e-22 PLATZ transcription factor family protein (.1) AT1G76590 90 / 1e-20 PLATZ transcription factor family protein (.1) AT1G32700 89 / 1e-20 PLATZ transcription factor family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013242 [exp] 441 / 2e-156 AT2G01818 213 / 3e-68 PLATZ transcription factor family protein (.1) Lus10028998 [exp] 248 / 2e-81 AT2G01818 180 / 2e-56 PLATZ transcription factor family protein (.1) Lus10003680 [exp] 241 / 6e-79 AT2G01818 183 / 1e-57 PLATZ transcription factor family protein (.1) Lus10009283 [exp] 119 / 1e-31 AT3G60670 249 / 2e-83 PLATZ transcription factor family protein (.1) Lus10015881 [exp] 117 / 7e-31 AT3G60670 251 / 4e-84 PLATZ transcription factor family protein (.1) Lus10008814 [exp] 108 / 3e-27 AT2G12646 301 / 4e-103 PLATZ transcription factor family protein (.1) Lus10039989 [exp] 108 / 7e-27 AT2G12646 292 / 3e-99 PLATZ transcription factor family protein (.1) Lus10036226 [exp] 102 / 7e-26 AT1G31040 191 / 3e-61 PLATZ transcription factor family protein (.1) Lus10008031 [exp] 104 / 8e-26 AT2G12646 294 / 1e-100 PLATZ transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G137300 [exp] 215 / 5e-69 AT2G01818 221 / 5e-73 PLATZ transcription factor family protein (.1) Potri.010G103500 [exp] 205 / 1e-64 AT2G01818 217 / 1e-70 PLATZ transcription factor family protein (.1) Potri.001G159200 [exp] 122 / 7e-33 AT1G31040 294 / 3e-101 PLATZ transcription factor family protein (.1) Potri.003G075600 [exp] 121 / 4e-32 AT1G31040 306 / 1e-105 PLATZ transcription factor family protein (.1) Potri.006G060500 [exp] 117 / 7e-31 AT2G12646 321 / 1e-111 PLATZ transcription factor family protein (.1) Potri.014G059300 [exp] 117 / 7e-31 AT3G60670 238 / 6e-79 PLATZ transcription factor family protein (.1) Potri.002G144900 [exp] 112 / 7e-29 AT3G60670 250 / 7e-84 PLATZ transcription factor family protein (.1) Potri.018G116000 [exp] 110 / 2e-28 AT2G12646 318 / 2e-110 PLATZ transcription factor family protein (.1) Potri.009G003200 [exp] 103 / 3e-26 AT2G27930 227 / 3e-76 PLATZ transcription factor family protein (.1) Potri.016G097100 [exp] 102 / 1e-25 AT1G32700 200 / 3e-65 PLATZ transcription factor family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04640 [flax] [poplar] PLATZ PLATZ transcription factor
Representative CDS sequence Show only first row Show all	>Lus10030763 pacid=23155399 polypeptide=Lus10030763 locus=Lus10030763.g ID=Lus10030763.BGIv1.0 annot-version=v1.0 ATGGTACAGCAACTCTCACGAATTGGATTTGATTATACTACAACCTCTGTTTCGCCTTTTCTTATTCCGAAATCGATTGGTTTTTGGGGCGGATTGTTGA CACAGGTAGGGTGCGGATTGTACGATTTAAAGAGCGGCAGCGACGATCGGAGAGGAAGGCAGTGGGTGGAGACTCTACTGAAGAGCGAGTTCTTCGGCGG GTGCGAGAGCCACAGAGAGCTGAGGAAGAACGAGAGGAACGTGTTCTGTCTCGATTGCGACGTCGGATTCTGCAAGCATTGCTCGAAATCCGATTCGTGC TTCCACCGCCATCTCCAGATTTGCAAGTACGTTTATCAGGACGTAGTCCGCCTCCAGGACATTCAGAAGTATCTCGACTGTTCTAGAATCCAGACGTATA AGATAAACGGAGAAAAAGCGGTGCATTTGAACCCAAGACCTGTGCTGAAAGATGCGAAGCCGTCGACTAAAGCCAAGTATGGATCCGCTTGTATAATTTG TGAAAGATACTTACAGGATGTGCCTAATCAATTCTGCTCCATTGCTTGCAAGGTTTCTGAAGGTGGATCATGTATACTAGAAGGCCAAACTGCCCCGTTG TCGGAGAACGAAGCCCCCATAACGCCGTTCAAGTCAACAAACGTTGGCGGCGGCTGTGAATACGACGACTGGTCAGCATTGACGGAAACCGAGTCGGACG GAGAAGGAGAAGGAAGAGGGACGGAGTGGTTAACCCCGTCACCGTCACCGACGGGAAATTGGAGGAGACAGTCTCACCAAAGAAAAGGGTGGATTACCTT GCACGACCACAAGAGTCAATATAGCTCAACACATCAAGCTTGGCTCGCCGCATCTAAGTTACTGCTCAATGGAATGCATGGTGCCATCTCCGCTAACAGC TCATGGAGGGAGGCTGTCATAACTCGTAATTGCATAGAGAGCATTACTCTTAGTACGTATTCTATGTCTATCCCGTCCCACTCTTATTGCCACTCATACA TCGGTACTACATAA
AA sequence Show only first row Show all	>Lus10030763 pacid=23155399 polypeptide=Lus10030763 locus=Lus10030763.g ID=Lus10030763.BGIv1.0 annot-version=v1.0 MVQQLSRIGFDYTTTSVSPFLIPKSIGFWGGLLTQVGCGLYDLKSGSDDRRGRQWVETLLKSEFFGGCESHRELRKNERNVFCLDCDVGFCKHCSKSDSC FHRHLQICKYVYQDVVRLQDIQKYLDCSRIQTYKINGEKAVHLNPRPVLKDAKPSTKAKYGSACIICERYLQDVPNQFCSIACKVSEGGSCILEGQTAPL SENEAPITPFKSTNVGGGCEYDDWSALTETESDGEGEGRGTEWLTPSPSPTGNWRRQSHQRKGWITLHDHKSQYSSTHQAWLAASKLLLNGMHGAISANS SWREAVITRNCIESITLSTYSMSIPSHSYCHSYIGTT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01818			PLATZ transcription factor fam...		Lus10030763 [exp]	0	1
AT5G27420		CNI1, ATL31	carbon/nitrogen insensitive 1 ...		Lus10043034 [exp]	2.2	0.8630
AT4G22250			RING/U-box superfamily protein...		Lus10035335 [exp]	5.1	0.8383
AT4G24060	DOF	AtDof4,6	Dof-type zinc finger DNA-bindi...		Lus10003207 [exp]	6.6	0.8271
AT4G25440	C3HZnF	ZFWD1	zinc finger WD40 repeat protei...		Lus10021655 [exp]	8.3	0.8296
AT1G34370	C2H2ZnF	STOP1	sensitive to proton rhizotoxic...		Lus10011495 [exp]	10.0	0.8222
AT5G56440			F-box/RNI-like/FBD-like domain...		Lus10023425 [exp]	15.4	0.7938
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Lus10020873 [exp]	16.0	0.8068
AT4G03600			unknown protein		Lus10039834 [exp]	20.7	0.8138
AT5G03680	Trihelix	PTL	PETAL LOSS, Duplicated homeodo...		Lus10035570 [exp]	23.4	0.7834
AT1G78380		GST8, ATGSTU19	GLUTATHIONE TRANSFERASE 8, A. ...		Lus10026198 [exp]	23.8	0.8126

Compare expression of checked genes

Lus10030763 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.