Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66140 121 / 1e-32 C2H2ZnF ZFP4 zinc finger protein 4 (.1) AT1G24625 106 / 2e-27 C2H2ZnF ZFP7 zinc finger protein 7 (.1) AT1G80730 91 / 2e-21 C2H2ZnF ATZFP1, ZFP1 ARABIDOPSIS THALIANA ZINC-FINGER PROTEIN 1, zinc-finger protein 1 (.1) AT5G25160 86 / 1e-19 C2H2ZnF ZFP3 zinc finger protein 3 (.1) AT5G10970 86 / 4e-19 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G57520 69 / 2e-14 C2H2ZnF ATZFP2, ZFP2 zinc finger protein 2 (.1) AT5G14010 67 / 3e-13 C2H2ZnF KNUCKLES, KNU KNUCKLES, C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G01860 59 / 3e-10 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G48890 58 / 4e-10 C2H2ZnF LATE LATE FLOWERING, C2H2-like zinc finger protein (.1) AT3G58070 57 / 2e-09 C2H2ZnF GIS GLABROUS INFLORESCENCE STEMS, C2H2 and C2HC zinc fingers superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013243 [exp] 468 / 2e-167 AT1G66140 125 / 3e-34 zinc finger protein 4 (.1) Lus10028997 [exp] 114 / 2e-30 AT1G24625 103 / 1e-27 zinc finger protein 7 (.1) Lus10003681 [exp] 114 / 3e-30 AT1G24625 112 / 9e-31 zinc finger protein 7 (.1) Lus10014350 [exp] 87 / 6e-20 AT1G80730 110 / 1e-29 ARABIDOPSIS THALIANA ZINC-FINGER PROTEIN 1, zinc-finger protein 1 (.1) Lus10010388 [exp] 78 / 1e-16 AT1G24625 88 / 4e-21 zinc finger protein 7 (.1) Lus10026597 [exp] 74 / 8e-16 AT1G66140 85 / 1e-20 zinc finger protein 4 (.1) Lus10017125 [exp] 74 / 1e-15 AT5G10970 95 / 4e-24 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10018328 [exp] 70 / 5e-14 AT5G10970 94 / 6e-24 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10025471 [exp] 68 / 1e-13 AT5G57520 92 / 3e-24 zinc finger protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G102700 [exp] 189 / 7e-59 AT1G66140 157 / 4e-47 zinc finger protein 4 (.1) Potri.008G138000 [exp] 181 / 9e-56 AT1G66140 155 / 2e-46 zinc finger protein 4 (.1) Potri.017G134800 [exp] 159 / 3e-47 AT1G66140 165 / 3e-50 zinc finger protein 4 (.1) Potri.004G084100 [exp] 159 / 5e-47 AT1G66140 164 / 6e-50 zinc finger protein 4 (.1) Potri.003G180600 [exp] 103 / 2e-25 AT5G10970 144 / 1e-41 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.001G047500 [exp] 99 / 6e-24 AT5G10970 143 / 5e-41 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.018G021400 [exp] 94 / 2e-22 AT5G10970 165 / 8e-50 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.006G261700 [exp] 92 / 1e-21 AT5G10970 166 / 4e-50 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.001G298700 [exp] 87 / 3e-20 AT1G24625 86 / 1e-20 zinc finger protein 7 (.1) Potri.006G063800 [exp] 85 / 1e-18 AT5G01860 92 / 6e-22 C2H2 and C2HC zinc fingers superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030764 pacid=23155413 polypeptide=Lus10030764 locus=Lus10030764.g ID=Lus10030764.BGIv1.0 annot-version=v1.0 ATGCACCAATTGAACTCCAAGTTTGACTTGGAGAATAATGAGTCCGAAAACAGCAGCCAAGTAGCATCCAACCTATCAGCACAGGAACCATCCCCGGACC AATCAAAGGACAGCACCACCACAACAACTCCTTCGTCCTCACTCTCCGAGCTCATCAAGCTCCAACAAATTCCGGCCCCACCCGATCTCTCCCTCGACTT GTCACTTCAACTCCACTCCCAGGACTCCGATGAGTTTGTTGAAAAGTTCATCACAGCAACCGAACACGAAACCAGCAATGAAGAACACCAACCACCCGCC CCAACACCACCAGGAGGATCAGGAGGAGCCATGCCACGAGTATTCCCTTGCAACTACTGCAGGCGAAAGTTCTACAGCTCGCAAGCCCTCGGTGGCCACC AGAATGCTCACAAACGCGAGCGAACCATAGCCAAGAGAGCAATGCGGATGGGGATCTTTTCGGACAGGTACAACAGCCTGGCATCACTCCCACTCCACGG TACCACGTTCCGAAACCTTGGCATCAAGGCTCACACCGCAATGCACCACCAAAGCCACATCCTCCCATTCCAAAGGCCACCACTTTCGGCACAGGCACAA GTACTGGTACAACCGGAATACAACGCTAGAGCTGGCTTTGGAGCGAGATTCGAGCAGAGCTACTACGGGGTGCCTGTTTTGACCACCACAGACGAGGAAG ATGTGAGCTTGTACTGGCCGGGGAGTTTCAGGCAGGTAGGGAGTGAAGGGTTTGCCACCACAACTATTAGCAGTAACAACAGTAATCGATTCGGTCTGCA TTTCGCTGAGAGGCCAAACACTACTACTACTACTGCAAGCACTGCAACAGGTTTTGTAGCTATGGAAGGTAGGCAAAGGACAGGCCATTGTTCATCATCA TCTTCTTCTTCAGCACCTGATCTAACTCTCAAGCTATAA
AA sequence Show only first row Show all	>Lus10030764 pacid=23155413 polypeptide=Lus10030764 locus=Lus10030764.g ID=Lus10030764.BGIv1.0 annot-version=v1.0 MHQLNSKFDLENNESENSSQVASNLSAQEPSPDQSKDSTTTTTPSSSLSELIKLQQIPAPPDLSLDLSLQLHSQDSDEFVEKFITATEHETSNEEHQPPA PTPPGGSGGAMPRVFPCNYCRRKFYSSQALGGHQNAHKRERTIAKRAMRMGIFSDRYNSLASLPLHGTTFRNLGIKAHTAMHHQSHILPFQRPPLSAQAQ VLVQPEYNARAGFGARFEQSYYGVPVLTTTDEEDVSLYWPGSFRQVGSEGFATTTISSNNSNRFGLHFAERPNTTTTTASTATGFVAMEGRQRTGHCSSS SSSSAPDLTLKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66140	C2H2ZnF	ZFP4	zinc finger protein 4 (.1)		Lus10030764 [exp]	0	1
AT2G02410			unknown protein		Lus10026272 [exp]	1.7	0.8342
AT1G66140	C2H2ZnF	ZFP4	zinc finger protein 4 (.1)		Lus10013243 [exp]	3.5	0.7718
AT4G19070			Putative membrane lipoprotein ...		Lus10015450 [exp]	7.9	0.7983
AT1G08980		ATTOC64-I, ATAM...	ARABIDOPSIS THALIANA TRANSLOCO...		Lus10004466 [exp]	13.3	0.7920
AT3G12480	CCAAT	NF-YC11	"nuclear factor Y, subunit C11...		Lus10041638 [exp]	15.0	0.7689
AT5G45360			F-box family protein (.1)		Lus10035689 [exp]	15.2	0.7553
AT1G61470			Polynucleotidyl transferase, r...		Lus10035077 [exp]	15.9	0.7262
AT1G53400			Ubiquitin domain-containing pr...		Lus10005423 [exp]	16.6	0.7466
AT2G27285			Coiled-coil domain-containing ...		Lus10020557 [exp]	17.0	0.7344
AT2G02760		ATUBC2	ubiquitin-conjugating enzyme 2...		Lus10030786 [exp]	19.2	0.7538

Compare expression of checked genes

Lus10030764 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.