Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11340 86 / 6e-20 S-locus lectin protein kinase family protein (.1) AT1G11410 86 / 9e-20 S-locus lectin protein kinase family protein (.1) AT4G27290 82 / 2e-18 S-locus lectin protein kinase family protein (.1) AT1G11350 78 / 6e-17 SD1-13, RKS2, CBRLK1 CALMODULIN-BINDING RECEPTOR-LIKE PROTEIN KINASE, S-domain-1 13 (.1) AT1G11300 77 / 1e-16 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) AT4G21390 76 / 2e-16 B120 S-locus lectin protein kinase family protein (.1) AT1G61610 72 / 4e-15 S-locus lectin protein kinase family protein (.1) AT1G11330 65 / 2e-12 S-locus lectin protein kinase family protein (.1.2) AT1G61390 62 / 1e-11 S-locus lectin protein kinase family protein (.1.2) AT4G03230 62 / 2e-11 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030768 [exp] 173 / 2e-50 AT1G11340 667 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10013244 [exp] 172 / 3e-50 AT1G11340 669 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10034637 [exp] 169 / 8e-49 AT1G11340 660 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10030767 [exp] 163 / 1e-46 AT1G11340 670 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10013245 [exp] 160 / 9e-46 AT1G11300 955 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10030766 [exp] 155 / 6e-44 AT1G11340 660 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10013246 [exp] 152 / 9e-43 AT1G11340 678 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10025512 [exp] 148 / 1e-41 AT1G11340 530 / 5e-177 S-locus lectin protein kinase family protein (.1) Lus10024064 [exp] 107 / 3e-27 AT1G11340 735 / 0.0 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G036400 [exp] 110 / 1e-28 AT1G11340 726 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036532 [exp] 108 / 1e-28 AT1G11340 247 / 6e-75 S-locus lectin protein kinase family protein (.1) Potri.011G035800 [exp] 110 / 2e-28 AT1G11340 705 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035700 [exp] 108 / 8e-28 AT1G11340 743 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036600 [exp] 107 / 2e-27 AT1G11340 741 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028300 [exp] 107 / 4e-27 AT1G11340 742 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036100 [exp] 105 / 1e-26 AT1G11340 719 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035913 [exp] 92 / 2e-24 AT4G27290 81 / 6e-19 S-locus lectin protein kinase family protein (.1) Potri.004G028701 [exp] 92 / 8e-22 AT1G11340 899 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G129000 [exp] 90 / 4e-21 AT4G27290 818 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030765 pacid=23155196 polypeptide=Lus10030765 locus=Lus10030765.g ID=Lus10030765.BGIv1.0 annot-version=v1.0 ATGACTTCTGCATCATCAGATGATAGTAGTATACATGCTAACAGATCAATTAAGGATGGCGAGCTTATAATCTCAAATGGTGGTAACTTTGCTCTTGGGT TTTTCAGTCCTGGCAGCTCAACCTACAGATATCTTGGTATCTGGTATCATAACAAGCCAGGCCAAACTGCGGTGTGGGTAGCTAACAGGAACACCCCCAT CAATGGCACTTCAGGAATCCTCACCAATGACGGATATGGAAACCTGTTGCTCTACAGCAGCATTCGAAACCAAGAGGAAGAACTAGACTTTCTGTATACA CTTGTTTGCCCTGAAATTTTGCATTCAGTAGTGCTGACTTGTGAGGAAGCAGCAACACCAGGGAATCAACTGTCAAGTCAACCTGGGTTGACTCTTGTAA ATTGGAGTTTAGCTTCTGGAATTGGGTTCCTTCTGATTTCGATTTGCCTGAAGGAAAAGCTACTGTCTTGTTGCTGCCAATTGTCAACTTCCAACTCAAT CCTTATGGTCTTCGGACTGGCTTGA
AA sequence Show only first row Show all	>Lus10030765 pacid=23155196 polypeptide=Lus10030765 locus=Lus10030765.g ID=Lus10030765.BGIv1.0 annot-version=v1.0 MTSASSDDSSIHANRSIKDGELIISNGGNFALGFFSPGSSTYRYLGIWYHNKPGQTAVWVANRNTPINGTSGILTNDGYGNLLLYSSIRNQEEELDFLYT LVCPEILHSVVLTCEEAATPGNQLSSQPGLTLVNWSLASGIGFLLISICLKEKLLSCCCQLSTSNSILMVFGLA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11340			S-locus lectin protein kinase ...		Lus10030765 [exp]	0	1
AT3G51520			diacylglycerol acyltransferase...		Lus10039136 [exp]	6.6	0.6994
AT3G07020		UGT80A2, SGT	UDP-glucosyl transferase 80A2,...		Lus10020381 [exp]	22.8	0.7010
					Lus10004033 [exp]	50.0	0.6085
AT3G54860		ATVPS33	VACUOLAR PROTEIN SORTING 33, S...		Lus10002776 [exp]	78.9	0.6706
AT1G71890		SUC5, ATSUC5	SUCROSE-PROTON SYMPORTER 5, Ma...		Lus10028614 [exp]	121.2	0.6509
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Lus10035502 [exp]	224.7	0.6154
					Lus10007244 [exp]	249.8	0.6326
AT2G40540		ATKUP2, ATKT2, ...	potassium transporter 2 (.1.2)		Lus10018270 [exp]	252.9	0.6021

Compare expression of checked genes

Lus10030765 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.