Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11340 655 / 0 S-locus lectin protein kinase family protein (.1) AT1G11410 620 / 0 S-locus lectin protein kinase family protein (.1) AT4G21380 575 / 0 ARK3 receptor kinase 3 (.1) AT1G65800 572 / 0 ARK2 receptor kinase 2 (.1) AT1G65790 556 / 0 ARK1 receptor kinase 1 (.1) AT4G21390 546 / 0 B120 S-locus lectin protein kinase family protein (.1) AT1G61610 535 / 3e-178 S-locus lectin protein kinase family protein (.1) AT1G11330 520 / 3e-172 S-locus lectin protein kinase family protein (.1.2) AT1G11350 497 / 1e-163 SD1-13, RKS2, CBRLK1 CALMODULIN-BINDING RECEPTOR-LIKE PROTEIN KINASE, S-domain-1 13 (.1) AT1G11300 499 / 9e-157 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030768 [exp] 1374 / 0 AT1G11340 667 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10034637 [exp] 1367 / 0 AT1G11340 660 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10030767 [exp] 1361 / 0 AT1G11340 670 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10013246 [exp] 1352 / 0 AT1G11340 678 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10013245 [exp] 1351 / 0 AT1G11300 955 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10013244 [exp] 1310 / 0 AT1G11340 669 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10025512 [exp] 1107 / 0 AT1G11340 530 / 5e-177 S-locus lectin protein kinase family protein (.1) Lus10007604 [exp] 892 / 0 AT1G11340 694 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10007610 [exp] 867 / 0 AT1G11410 693 / 0.0 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G035700 [exp] 784 / 0 AT1G11340 743 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035800 [exp] 761 / 0 AT1G11340 705 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036400 [exp] 760 / 0 AT1G11340 726 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028300 [exp] 759 / 0 AT1G11340 742 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036100 [exp] 758 / 0 AT1G11340 719 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036600 [exp] 753 / 0 AT1G11340 741 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028701 [exp] 682 / 0 AT1G11340 899 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028466 [exp] 667 / 0 AT1G11340 884 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028600 [exp] 667 / 0 AT1G11340 875 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035600 [exp] 617 / 0 AT4G21380 711 / 0.0 receptor kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0168 [flax] [poplar] PAN PF08276 [flax] [poplar] PAN_2 PAN-like domain CL0168 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10030766 pacid=23155197 polypeptide=Lus10030766 locus=Lus10030766.g ID=Lus10030766.BGIv1.0 annot-version=v1.0 ATGGATGCACCAAGCTTCATTCTGCTTCCTCTTATTCTTACTCTTCTCTTCCATTCTGAAACCTCTGCATCCTCAATTAATGACACTTTACATGCTAACA GATCAATCAAGGATGGGGAGCTTATCATCTCCAAAGGTGGCAACTTTGCTCTTGGATTTTTCAGCCCTGGTGGTTCAACATACAGAAGATACCTTGGTAT CTGGTTTAATAACAAGCCAGGCAAAATTGTGGTGTGGGTAGCTAACAGGGACACCCCCATCAACGGCACCTCGGGAATCCTCATCAACGATGGATATGGA AACCTTTTGCTCTACAGCAGCATCCAAAACCAAGAGCTTCCCATATGGTCTACAAACGTTTCGAGAGCCTTTCCCTGTTCAGCTCAACTATTGGATTCAG GAAATCTGGTGTTGGTCCAGCAAGGTACCAATATCAAAACATCACTACTTCTGTGGCAAAGCTTTGATCATCCTACGGATACCTTGTTACCGGGTATGAA AATCGGCATGAATCTAGATACTGGTTTGAACACGTTCCTGACATCTTGGAGATCAAGAGATGATCCAGGAACTGGTAATATCTCGGTTAAGCTCAACCCG AATGGCTTGCCTCAGTTCTTTGTGTATCAAGGTACGAATCCCCTTTGGAGGAGTGTCCCATGGCCATGGCAAGTAGTCCATCGTTCATTCAATCATTCTT TTGCTAATGATGAGCTTGGGATATGGTACTCGTTTTCTCCATATGATGCTTCGACTGTGTTGATGCTTGTGATTGAAAATTTGGGAACAGTGAGGGCAGT GATGTGGGATGAAGCCGGTGGGATATGGAAGGAGTTCAATACAATTTCGCTGCAGAAGAAGTGTGACATATACGGCCATTGCGGTGCTTATGGACTGTGT GACTCTAGCGCCTCTTTTCTTTCAGAATGTATGTGCTTACCTGGTTATGAACCAAAGTCCCAAAGCAAGGTGCTTTTTCGAGATGGAAATGCCGGGTGTG TCAGGAAGCGATTGGAATCCTCACTTTGTGGGAAGGGAGAAGGTTTTGTGAGAGTTAGAAATGTGAAGATTCCTGATGCATCACAAGCAGTTTGGATTGA CCAAGGGTTGAACAAAGTGAACTGTGAAGATGAATGTAGAAAGAAGTGCTCCTGCAGTGCATATACTAGTGCTAATATGGTTGGGAAAGCGTCTGGTTGT TTGACATGGCATGGAGAACTGATGGATGCAGTACACCTCCCGCTACCTGATCAAGAAATCTACGTTCGTGTCGATGCTCTAGGACTAGCTGAGTATGAAG TGCAATCTGACGAGTTTGATGAGCTTAGTTTTAAGCTAAGCATTCTCGTTCCATCAGTTACTTCGGTTTGCATTGTCTGCATCTTGTTTGCCTACACACT GTTCAAGAGATGGAGAAAGCAGAAAGCAAGGAAAGCAAAAGAAACACGGATCAGAAACTTGTTTCATCCGAGCGAAGATTCAAGTTACTTGCAGGATTCT ATGGTGACAAAGGAAACGAAACGAAGTAAAACGTATCCAGAATTACCATTTTTCAGCCTCAATTTAATACGTGCTGCGACCAACAACTTTTCATCTGCTA ACAAACTCGGACAAGGGGGTTTTGGTTCTGTGTACAAGGCGAAATTTCCATCCGGGGAAGAGGTTGCTGTAAAAAGACCACCGAAAAAATCGAGGCAGGG GCTAGAACAGTTTAAAAGTGAGGTGTTCTTGATTTCGAAATTGCAGCATAGGAACCTTGTGAAGCTCTATGGATGCTGCATTGAGAAAGAAGAGCAAATG TTGATTTACGAGTATTTACCCTATAAGAGTTTGGATTCGTTTCTTTTTGTTGAGCATCTGCCTGGTGGTAAGCCATTCTTAGACTGGAGAAAGCGGTTTA ATATCATTGTTGGAATTTCGCGTGGGATCTTGTATCTTCATCAAGACTCGAGATTCAGAATAATCCACAGAGATCTGAAAACCAGCAATGTTCTCTTGGA TGCGGAGTTTAACCCCAAAATATCCGATTTTGGGATGGCCATAGTACTGGAGGGGGACCAAGTTAAAGGGGTGACTAGTAGAATTGGTGGAACATATGGT TACATGGCTCCAGAGTATGTATATTGTGGGGAATTCTCAGTAAAATCGGACGTGTTTAGTTTCGGGGCGATGCTGCTGGAAATTGTGACTGGGAAGAAGA TCAACATAGGGTTTAGTGGGTTTACTACTCACGAGGAGGATTGTGCGGCCTTAAACTTGATTGGATATGTATGGAAGCTGTGGAAAGCAGAGAGAGTGCG GGATATAGTGGATCCATCACTTCAAGTATCGACTAGTACCCGGAGATGCATCCATATTGGGCTGTCATGTCTTGAGGAAGATCCGGTAGAGCGACTTGAT ATGCAGACAGTGGTTGCCATGTTGAGCAACGAAACAATCCCACTTCCTCCACTGAAATGTCCTGCATTCGTCTGTGCTGCAAAGTCTAGAGTTGAGGTGA GGGTGGCAGAAGAATGCTCCATAAATGAGATGACATTTTCAGACACTCTTACTCGCTGA
AA sequence Show only first row Show all	>Lus10030766 pacid=23155197 polypeptide=Lus10030766 locus=Lus10030766.g ID=Lus10030766.BGIv1.0 annot-version=v1.0 MDAPSFILLPLILTLLFHSETSASSINDTLHANRSIKDGELIISKGGNFALGFFSPGGSTYRRYLGIWFNNKPGKIVVWVANRDTPINGTSGILINDGYG NLLLYSSIQNQELPIWSTNVSRAFPCSAQLLDSGNLVLVQQGTNIKTSLLLWQSFDHPTDTLLPGMKIGMNLDTGLNTFLTSWRSRDDPGTGNISVKLNP NGLPQFFVYQGTNPLWRSVPWPWQVVHRSFNHSFANDELGIWYSFSPYDASTVLMLVIENLGTVRAVMWDEAGGIWKEFNTISLQKKCDIYGHCGAYGLC DSSASFLSECMCLPGYEPKSQSKVLFRDGNAGCVRKRLESSLCGKGEGFVRVRNVKIPDASQAVWIDQGLNKVNCEDECRKKCSCSAYTSANMVGKASGC LTWHGELMDAVHLPLPDQEIYVRVDALGLAEYEVQSDEFDELSFKLSILVPSVTSVCIVCILFAYTLFKRWRKQKARKAKETRIRNLFHPSEDSSYLQDS MVTKETKRSKTYPELPFFSLNLIRAATNNFSSANKLGQGGFGSVYKAKFPSGEEVAVKRPPKKSRQGLEQFKSEVFLISKLQHRNLVKLYGCCIEKEEQM LIYEYLPYKSLDSFLFVEHLPGGKPFLDWRKRFNIIVGISRGILYLHQDSRFRIIHRDLKTSNVLLDAEFNPKISDFGMAIVLEGDQVKGVTSRIGGTYG YMAPEYVYCGEFSVKSDVFSFGAMLLEIVTGKKINIGFSGFTTHEEDCAALNLIGYVWKLWKAERVRDIVDPSLQVSTSTRRCIHIGLSCLEEDPVERLD MQTVVAMLSNETIPLPPLKCPAFVCAAKSRVEVRVAEECSINEMTFSDTLTR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11340			S-locus lectin protein kinase ...		Lus10030766 [exp]	0	1
AT4G37870		PCK1, PEPCK	phosphoenolpyruvate carboxykin...		Lus10019242 [exp]	5.4	0.9322
AT4G24700			unknown protein		Lus10017951 [exp]	5.7	0.9010
AT5G07470		PMSR3, ATMSRA3	ARABIDOPSIS THALIANA METHIONIN...		Lus10013673 [exp]	7.1	0.8469
AT1G22440			Zinc-binding alcohol dehydroge...		Lus10009517 [exp]	8.4	0.9157
AT4G05230			Ubiquitin-like superfamily pro...		Lus10007641 [exp]	8.8	0.9073
AT5G10530			Concanavalin A-like lectin pro...		Lus10042310 [exp]	9.2	0.8007
AT3G05610			Plant invertase/pectin methyle...		Lus10015211 [exp]	13.1	0.9069
AT2G25930		PYK20, ELF3	EARLY FLOWERING 3, hydroxyprol...		Lus10006857 [exp]	14.5	0.9069
					Lus10006918 [exp]	16.4	0.9068
AT4G11650		ATOSM34	osmotin 34 (.1)		Lus10017170 [exp]	16.6	0.8147

Compare expression of checked genes

Lus10030766 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.