Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11340 664 / 0 S-locus lectin protein kinase family protein (.1) AT1G11410 640 / 0 S-locus lectin protein kinase family protein (.1) AT4G21380 580 / 0 ARK3 receptor kinase 3 (.1) AT1G65800 575 / 0 ARK2 receptor kinase 2 (.1) AT4G21390 574 / 0 B120 S-locus lectin protein kinase family protein (.1) AT1G65790 556 / 0 ARK1 receptor kinase 1 (.1) AT1G61610 550 / 8e-179 S-locus lectin protein kinase family protein (.1) AT1G11330 540 / 3e-175 S-locus lectin protein kinase family protein (.1.2) AT1G11350 508 / 6e-163 SD1-13, RKS2, CBRLK1 CALMODULIN-BINDING RECEPTOR-LIKE PROTEIN KINASE, S-domain-1 13 (.1) AT1G11280 484 / 4e-154 S-locus lectin protein kinase family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013246 [exp] 1387 / 0 AT1G11340 678 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10034637 [exp] 1367 / 0 AT1G11340 660 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10013245 [exp] 1361 / 0 AT1G11300 955 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10030766 [exp] 1356 / 0 AT1G11340 660 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10030768 [exp] 1336 / 0 AT1G11340 667 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10013244 [exp] 1323 / 0 AT1G11340 669 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10025512 [exp] 1118 / 0 AT1G11340 530 / 5e-177 S-locus lectin protein kinase family protein (.1) Lus10007604 [exp] 899 / 0 AT1G11340 694 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10007610 [exp] 869 / 0 AT1G11410 693 / 0.0 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G035700 [exp] 808 / 0 AT1G11340 743 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028300 [exp] 804 / 0 AT1G11340 742 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035800 [exp] 784 / 0 AT1G11340 705 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036400 [exp] 776 / 0 AT1G11340 726 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036600 [exp] 771 / 0 AT1G11340 741 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036100 [exp] 765 / 0 AT1G11340 719 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028701 [exp] 709 / 0 AT1G11340 899 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028466 [exp] 691 / 0 AT1G11340 884 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028600 [exp] 689 / 0 AT1G11340 875 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035600 [exp] 634 / 0 AT4G21380 711 / 0.0 receptor kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [flax] [poplar] PAN PF08276 [flax] [poplar] PAN_2 PAN-like domain CL0168 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10030767 pacid=23155424 polypeptide=Lus10030767 locus=Lus10030767.g ID=Lus10030767.BGIv1.0 annot-version=v1.0 ATGGATGCACCACTGCTCATCCTCCTTCCTCTTCTTCTTACTCTTCAATTCCATGACAAAGCCTCTGCATCATCAACCGACACTATACATGCTAATAGAT CAATTAAGGATGGCGAGCTTATCATCTCGAAAGGCGGGAACTTTGCTCTTGGGTTTTTCAGCCCTGGCAGCTCAACTTACAGAAGATACCTTGGTATCTG GTTTCACAACAAGCCAGGCCAAACTGTGGTGTGGGTAGCTAACAGGAACACCCCCATCAACGGCACTTCAGGAATCCTCACCAATGATGGATATGAAAAC CTTCTCCTATACAGCAGCATCCGAAACCAAGAGGTTCCGATATGGTCTACAAACGTTTCGAGAACCTTTCCTTGTACGGCTCAACTATTGGATTCAGGAA ATCTGGTCTTGGTTCAACAAGGTACAAGGGGTAACAATACAACACTACCTGTGTGGCAAAGCTTTGAGCATCCTACGGATACCTTTTTACCGGGTATGAA AATTGGCATGAATCTAGAAACAGGTTTGAATGTGTTCCTTGCCTCTTGGAGATCAGGAGATGATCCAGGAACTGGCGATTTCTCGTTTAAGCTAAATCCG AATGGCTCGCCTCAGTTCTTTTTGTACCATGGTAGGAATCCCCGTTGGCGGGGTGTCCTATGGCCATGGAAAGTAGAGCATCACTTATACAATGATTCTT TTGTTAATAATGAAGTTGGGATATGGTACTCGTTTGTTCCTCATGATGCTTCAACTCTGTTGATGCTTGTGATCGACAATTGGGGAACAGCGAGGACAGT GATGTGGGACGAAGCTGGTGGGATATGGAAGGAGTTCAATGTGATTTCGCACCAGAAATGTGATATATACGGTCATTGTGGTGCTTATGGAAAGTGTGAC CCTAGCTCCTCTTTTCTTTCAGAATGTATGTGCTTACCCGGTTATGAACCAAAGTCCCAAAGCAAGGTACTTTTCAAAGATGGAAATGGCGGGTGTGTTA GGAAGCGATCGGAATCCTCTGTTTGTGGGAAGGGAGAAGGTTTTGTGAGACTTAGAAATGTGAAGATTCCTGATGCATCAGAAGCAGTTTGGGTGGACCA AGGGTTGACCAAAGTGAACTGTGAAGATGAGTGTAGAAACAATTGCTCTTGCAGTGCATATACTACTGCTAATATTGTTGGGAAAGGGACTTGTTGTTTG ACATGGCATGGAGAACTAATGGATACAGTACACTTTGCGACATCTGATCAAGAGATCTATGTTCGTGTCGATGCCGTAGAACTAGCCGAGTATGCAGTGC AATCCGGTGAGTTTGATGAGCTTCATTTTAAGCTAAGCATTCTCGTTCCATCAGTTACTTCGGTTTGCATCGTCTGCATCTTGTTTGCATGCACACTGTT CAAGAGGTGGAGAAAGCGGAAAGCAAGGAAAGCAAAAGAAAGGCGGATCAGAAACTTGTTTCATCCGAGTGGAGATTCGAGTTACTTGCAGGATTCTATG GTCCCAAAGGAAATGGAACGAAGTAAAATGTACCGAGAATTACCAATTTTCAGCCTCAATGTGATATGTGCTGCAACCAACAACTTTTCATCCGATAACA AACTTGGACAAGGGGGTTTTGGTTCTGTGTACAAGGGTATATTTCCATCCGGGGAAGAGGTTGCTGTAAAAAGACCGCCAACAAATTCGAGGCAGGGGCT TGAACAGTTCAAAAGTGAAGTGTTCTTGATTTCGAAATTGCAGCATAGGAACCTTGTGAAGCTCTATGGATGCTGCATTGAGGAAGATGAGCAGATGTTG ATTTATGAATACTTACCCTATAAGAGTTTGGATACACTTCTTTTTGTTGAGCATGAGCCGGGTAGTAACCCATTATTAGACTGGCGAAAGCGGTTTAATA TCATTGTTGGTATTGCACGAGGGATTTTGTATCTTCATCAAGACTCGAGGTTCAGAATAATCCACAGAGATCTAAAAACAAGCAATGTTCTCTTGGATGC GGAGCTTAACCCCAAAATATCCGATTTTGGGATGGCTAGAGTACTCGAGGGGGACCAAGTCAAAGGGGTGACTACTAGAATCGGTGGAACTTATGGCTAT ATGGCTCCAGAGTATGCATATTATGGGAAATTCTCAGTGAAATCAGACGTGTTTAGTTTTGGAGCGATGTTGCTGGAAATTTTGAGTGGGAAGAGTATCA ACAGTGGGTTTACTACTTACGAGCAGGATCGTGCTGCCTTAAGCTTGATTGGATACGTATGGGAGCTATGGAAAGCAGAGAGAGTGGGGGATATAGTGGA TCCATCACTTCAAGTGTCTACTAGTACCCGGAGATGCATCCATATCGGGCTGTCATGTCTCGAGGAAGATCCGGTAGATCGACCAGATATGCAGACAGTA GTTTTCATGTTGAAGAGCGAAACAGCTCCACTTCCTCTGCTGAAACGTCCTGCATTCGCCTGCGCTGCAAAGTCCAAAGTTGAGAATCTGGTGTTGGTCC AACAAGGTACTTCAAGTAACAAAACATCACTTGTGTGGCAAAGCTTTGATCATCCTACGAATACCTTTTTAACGGGTATGAAAATAGGAATTAATCTAGA AACAGGTTTGAACTTGTTCTTGACATCTTGGAGATCAGGAGATGATCCAGGAACTGGCGATTTCTCGTTTAAGCTCAATCCGAATGGCTTGCCTCAGTTC TTTTTGTACCATGGAACAGCAAGAGCGGTGAAGTGGGACGAAGCTGGTGGGATATGGAAAGAGTTCTATGTGATTTCGCACGAGAAATGTGATATATACG GTTATTGTGGTGCTTATGGAAAGTGTGACCCTAGCTCCTCTTTTCTTTCGGAATGTGCTTGCTTACCCGGGTATGAACCGAAATCTCAAAGCAAGGTGCT TTACAAAGATGGAAATGTCGGGTGTGTCAGGAAACGACCGGAATCCTCTGTTTGTGGGAAGGGAGAAGGTTTTGTGAGAGTTAGAAATGTGAAAATTCCT GATGCATCACAAGCAGTTTGGGTGGACCAAGGATTGAACAAAGTGAATTGTGAAGATGATTGTAGAAAGAATTGCTCGTGCAGTGCATATACTACTGCTA ATATTTCTGACAAAGGGATTGGCTGTTTGACATGGCATGGAGAACTAATGGATACAGTACACTTCGTGACATCTGATCAAGAAATCTACGTTCGTCTTGA TGCCCTGGAACTAGCCGAGTATGCAGTGCAATCTGGTGAGTATTATGAGCTTCATTTTAAGCTAAGCGTTCTCATTCCATCAGTTACTTCGGTCTGGATT GTCTGCATCTTCTTTGCTTACATATTGTTCAAGATATGGAGAAAGTGGAAAGCAAGGAAAGTAAAAGAAAGGCGGATCAGAAACTTGTTTCATCCGAGCG CTAATTCGAGTTACTTGCAAGATTCTATGGTCACAAACGAAATGCAACGAAGTAAAATGTACCCAGAATTACCATTCTATAGCCTCGACTTGATACGTGC TGCAACCAACAAATTTTCATCTGATAACAAACTTGGACAAGGGGGTTTTGGTTATGTATACAAGGATGTTACCGTCTCTCAACTGTCCGACTGCCGTTCC ACAATCAGTCCATCCACCCCATCGTTAGATTTCGAGGGAAACATGGAGATAGTGATGGCTGCTCTGCTCTGCGCTCTCATCTTCGCCATCGGCTTGGATT GGATCGCCCACTGCACGTTGCCCCGCAACCGTCTTGTAGCAGCAGCAGCGCCCACGGTGAGGAATAGCCTGAAGAAGAGTCAGATCCATGTCGCCATTTA TGGGTTTCAGTCACGTCCCCTGCGCTTTTTAACAGAAGAGAAGAAGCAGTACATGAGCTGTGCATTGAAGTAA
AA sequence Show only first row Show all	>Lus10030767 pacid=23155424 polypeptide=Lus10030767 locus=Lus10030767.g ID=Lus10030767.BGIv1.0 annot-version=v1.0 MDAPLLILLPLLLTLQFHDKASASSTDTIHANRSIKDGELIISKGGNFALGFFSPGSSTYRRYLGIWFHNKPGQTVVWVANRNTPINGTSGILTNDGYEN LLLYSSIRNQEVPIWSTNVSRTFPCTAQLLDSGNLVLVQQGTRGNNTTLPVWQSFEHPTDTFLPGMKIGMNLETGLNVFLASWRSGDDPGTGDFSFKLNP NGSPQFFLYHGRNPRWRGVLWPWKVEHHLYNDSFVNNEVGIWYSFVPHDASTLLMLVIDNWGTARTVMWDEAGGIWKEFNVISHQKCDIYGHCGAYGKCD PSSSFLSECMCLPGYEPKSQSKVLFKDGNGGCVRKRSESSVCGKGEGFVRLRNVKIPDASEAVWVDQGLTKVNCEDECRNNCSCSAYTTANIVGKGTCCL TWHGELMDTVHFATSDQEIYVRVDAVELAEYAVQSGEFDELHFKLSILVPSVTSVCIVCILFACTLFKRWRKRKARKAKERRIRNLFHPSGDSSYLQDSM VPKEMERSKMYRELPIFSLNVICAATNNFSSDNKLGQGGFGSVYKGIFPSGEEVAVKRPPTNSRQGLEQFKSEVFLISKLQHRNLVKLYGCCIEEDEQML IYEYLPYKSLDTLLFVEHEPGSNPLLDWRKRFNIIVGIARGILYLHQDSRFRIIHRDLKTSNVLLDAELNPKISDFGMARVLEGDQVKGVTTRIGGTYGY MAPEYAYYGKFSVKSDVFSFGAMLLEILSGKSINSGFTTYEQDRAALSLIGYVWELWKAERVGDIVDPSLQVSTSTRRCIHIGLSCLEEDPVDRPDMQTV VFMLKSETAPLPLLKRPAFACAAKSKVENLVLVQQGTSSNKTSLVWQSFDHPTNTFLTGMKIGINLETGLNLFLTSWRSGDDPGTGDFSFKLNPNGLPQF FLYHGTARAVKWDEAGGIWKEFYVISHEKCDIYGYCGAYGKCDPSSSFLSECACLPGYEPKSQSKVLYKDGNVGCVRKRPESSVCGKGEGFVRVRNVKIP DASQAVWVDQGLNKVNCEDDCRKNCSCSAYTTANISDKGIGCLTWHGELMDTVHFVTSDQEIYVRLDALELAEYAVQSGEYYELHFKLSVLIPSVTSVWI VCIFFAYILFKIWRKWKARKVKERRIRNLFHPSANSSYLQDSMVTNEMQRSKMYPELPFYSLDLIRAATNKFSSDNKLGQGGFGYVYKDVTVSQLSDCRS TISPSTPSLDFEGNMEIVMAALLCALIFAIGLDWIAHCTLPRNRLVAAAAPTVRNSLKKSQIHVAIYGFQSRPLRFLTEEKKQYMSCALK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11340			S-locus lectin protein kinase ...		Lus10030767 [exp]	0	1
AT4G34350		HDR, CLB6, ISPH	CHLOROPLAST BIOGENESIS 6, 4-hy...		Lus10040509 [exp]	8.9	0.9641
AT5G53560		B5#2, ATB5-A, A...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10022357 [exp]	10.1	0.9404
AT3G50930		BCS1	cytochrome BC1 synthesis (.1)		Lus10014284 [exp]	14.1	0.9584
AT1G13340			Regulator of Vps4 activity in ...		Lus10033552 [exp]	16.2	0.9602
AT5G45860		RCAR5, PYL11	regulatory components of ABA r...		Lus10003187 [exp]	16.7	0.9590
					Lus10023495 [exp]	20.5	0.9289
AT5G01750			Protein of unknown function (D...		Lus10025253 [exp]	23.0	0.9571
AT5G13080	WRKY	ATWRKY75, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10003128 [exp]	24.2	0.9514
AT3G11920			glutaredoxin-related (.1)		Lus10030563 [exp]	24.2	0.9560
AT4G21120		CAT1, AAT1	CATIONIC AMINO ACID TRANSPORTE...		Lus10023271 [exp]	28.3	0.9446

Compare expression of checked genes

Lus10030767 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.