Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11340 657 / 0 S-locus lectin protein kinase family protein (.1) AT1G11410 635 / 0 S-locus lectin protein kinase family protein (.1) AT1G65800 578 / 0 ARK2 receptor kinase 2 (.1) AT4G21380 566 / 0 ARK3 receptor kinase 3 (.1) AT1G65790 555 / 0 ARK1 receptor kinase 1 (.1) AT4G21390 550 / 0 B120 S-locus lectin protein kinase family protein (.1) AT1G61610 544 / 0 S-locus lectin protein kinase family protein (.1) AT1G11330 530 / 2e-175 S-locus lectin protein kinase family protein (.1.2) AT1G11350 518 / 4e-171 SD1-13, RKS2, CBRLK1 CALMODULIN-BINDING RECEPTOR-LIKE PROTEIN KINASE, S-domain-1 13 (.1) AT4G27300 499 / 7e-164 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034637 [exp] 1417 / 0 AT1G11340 660 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10030766 [exp] 1387 / 0 AT1G11340 660 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10013244 [exp] 1359 / 0 AT1G11340 669 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10013246 [exp] 1350 / 0 AT1G11340 678 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10013245 [exp] 1347 / 0 AT1G11300 955 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10030767 [exp] 1328 / 0 AT1G11340 670 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10025512 [exp] 1120 / 0 AT1G11340 530 / 5e-177 S-locus lectin protein kinase family protein (.1) Lus10007604 [exp] 943 / 0 AT1G11340 694 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10007610 [exp] 893 / 0 AT1G11410 693 / 0.0 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G035700 [exp] 798 / 0 AT1G11340 743 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028300 [exp] 797 / 0 AT1G11340 742 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036600 [exp] 776 / 0 AT1G11340 741 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036400 [exp] 776 / 0 AT1G11340 726 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035800 [exp] 775 / 0 AT1G11340 705 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036100 [exp] 763 / 0 AT1G11340 719 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028701 [exp] 686 / 0 AT1G11340 899 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028466 [exp] 671 / 0 AT1G11340 884 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028600 [exp] 669 / 0 AT1G11340 875 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035600 [exp] 644 / 0 AT4G21380 711 / 0.0 receptor kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [flax] [poplar] PAN PF08276 [flax] [poplar] PAN_2 PAN-like domain CL0168 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10030768 pacid=23155201 polypeptide=Lus10030768 locus=Lus10030768.g ID=Lus10030768.BGIv1.0 annot-version=v1.0 ATGTCAGAGAAGAAAAGAAGGGAAAAGGATCAAGTAATTTGCTACACTGGGTTTTATGACTTTTCAGTGACAGGTGGTACCTTTGACGCGTATATCATTT GTGTCCTTGCCAGCTTGGTGGACATCCTTTTCGAAAATTTGATAAGCTGGGAGGATACAAAGAGTGCCAATGAAGACTATTTCCAGCTAATATCAATGGA TGCACCAAGGCTCATTCTGCTTCCTCTTCTTCTTAGTCTTCTCTTCCATGGTAAAACCTCTGCATCATCAAATCACAATACTACTATACATGCTAACAGA TCAATTAAGGATGGCGAGCTTATAATCTCCAATGGTGGTAACTTTGCTCTTGGGTTTTTCAGTCCTGGCAGCTCAACCTACAGATATCTTGGTATCTGGT ATCATAACAAGCCAGGCCAAACTGCGGTGTGGGTAGCTAACAGGAACACCCCCATCAACGGCACTTCAGGAATCCTCACCAATGACGGATATGGAAACCT TTTGCTCTACAGCAACACCCGAAACCAAGAGCTTCCCATATGGTCTACAAACGTTTCCAGAAACTTCCCCTGTTTGGCTCAACTATTGGATTCAGGAAAT CTGGTGTTGGTCCAACAAGGTACAGCAAGTAACAATACATCAGTAATTGTGTGGCAAAGCTTTGATCATCCTACAGACACCTTGTTACCGGGTATGAAAA TAGGCATGAATCTAGATACAGGTCTGAACATGTTCCTGACATCTTGGAGATCAAGAGATGATCCAGGAATTGGTGATTTCTCGATTAAGCTCAACCCGAA TGGCTTGCCTCAGTTCTTTGTGTATCAAGGTACGAACCCTTATTGGCGGAGTCTCCCATGGCCCTGGAACGTAGACCAACGTCCATTTAATGATTCTTTT GTTAATGATAAACTTGGGATATGGTACTCGTTTGCTCCCTATGATGCTTCGACTGTGTTGATGATCGTGATCCACAATTCGGGAACAGTGAGGGGAGTGA CGTGGGACGAAGTTGGTGGGATATGGAAGGACTTCTATGCAATTTCGCACCAGAAGTGTGACATATATGGCTATTGTGGTGCTTATGCAAAATGTGACCC TAGCTCCTCTTTTGTTTCACAATGTATGTGCTTACCTGGTTATGATGCAAAGTCCCAAAGCAAAGTGCTTTCCGGAGATGGGTGTGTCAGGAAACGATCA GAATCCTCTATTTGTGGGAAGGGAGAAGGATTTGTGAGAGTTAGAAATGTCAAGATTCCTGATGCATCAGAAGCAGTTTGGATGGACCAACGATTGAACA AAGTGAACTGTGAAGATGAGTGTAGAAAGAATTGCTCTTGCAGTGCATATACGACTGCTAATATTGTTGGGAAAGCAACTGGTTGTTTGACATGGCATGG AGAACTAATGGATACAGTACACTTCCCAACACCTGATCACGAAATCTATGTTCGTGTCGACGCTCTAGAATTAGCTAAGTATGCAATGGAATCTGATCAG TTTAATGAGCTTAGTTTTAAGCTAAGCGTTCTCGTTCCATCAGTTTCTTCGGTTTGGGTTGTCTGCATCTTGTTTGCCTACACAATGTTCAAGAGGTGGA GAAAATGGAAAGCAAGGAAAGTAACAGAAAGGCGGATCGGAAACTTGTTTCGTCCGAGTGAGGATTCGAGTTCCTTGCAGGATTCTATGGTGACAAAGGA AATGAGAAGAAGTAAAATGTACCCAGAGTTACCATTTTTCAGCCTCAGCGTGATACAAGCTGCAACCAACAACTTTTCATCTGATAACAACCTTGGAAAG GGGGGGTTTGGTTCTGTGTACAAGGGAAAATTTTCATCCGGGGAAGAGATTGCTGTAAAAAGACCGCCACGAAATTCAAGGCAGGGGCTTGAACAGTTTA AAAGTGAAGTGTTCTTGATTTCGAAATTGCAGCATAGGAACCTTGTGAAGCTCTATGGATGCTGCATTGAGGAAGAAGAGCAGATGTTGATTTATGAATA CTTACCCTATAAGAGTTTGGATTCACTTCTTTTTGTTGAGCATCTGCCTGGTGGTAAGCCTTTCTTAGACTGGCGAAAGCGGTTTAATATCATTGTTGGT ATTGCGCGTGGAATCTTATATCTTCATCAAGACTCGAGGTTCAGAATAATCCATAGAGATCTAAAAACCAGCAATATTCTATTGGATGCGGAGCTTAATC CCAAAATATCTGATTTTGGGATGGCTAGAGTACTGGAGGGTGACCAAGTTGAAGGGGTGACTAGTAGAATCGGTGGAACTTATGACTACATGGCTCCAGA GTATGCATATTTTGGGAAGTTCTTTGTGAAATCAGATGTGTTTAGTTTTGGAGTGATGCTGCTGGAAATTGTGACTGGGAAAAGGATCAACAGTGGATTT ACTACTCATGACGAGGATCCTACTGCCTTAAACTTGATTGGATACGTATGGGAGCTATGGCAAGCAGAGAGAGTTGGGGATATAGTGCATCCATCACTTC AAGTGTCCACTAGTACCTTGAGATGTATCCATATCGGATTGTCAGGTCTCGAGGAAGATCCGGTTGATCGACCAGATATGCAGACATTAGTTTTCATGTT GAACAGCGAAACAGCCCCACTTCCTCCACTGAAACGTCCTGCATTTGTCTGCGCCGCAAAATCCAAAGTTGAGTTGAAGGTAGCAGAAGAATGCTCAATA AACGATATGACATTCTCAGACACTCTTACTCGCTGA
AA sequence Show only first row Show all	>Lus10030768 pacid=23155201 polypeptide=Lus10030768 locus=Lus10030768.g ID=Lus10030768.BGIv1.0 annot-version=v1.0 MSEKKRREKDQVICYTGFYDFSVTGGTFDAYIICVLASLVDILFENLISWEDTKSANEDYFQLISMDAPRLILLPLLLSLLFHGKTSASSNHNTTIHANR SIKDGELIISNGGNFALGFFSPGSSTYRYLGIWYHNKPGQTAVWVANRNTPINGTSGILTNDGYGNLLLYSNTRNQELPIWSTNVSRNFPCLAQLLDSGN LVLVQQGTASNNTSVIVWQSFDHPTDTLLPGMKIGMNLDTGLNMFLTSWRSRDDPGIGDFSIKLNPNGLPQFFVYQGTNPYWRSLPWPWNVDQRPFNDSF VNDKLGIWYSFAPYDASTVLMIVIHNSGTVRGVTWDEVGGIWKDFYAISHQKCDIYGYCGAYAKCDPSSSFVSQCMCLPGYDAKSQSKVLSGDGCVRKRS ESSICGKGEGFVRVRNVKIPDASEAVWMDQRLNKVNCEDECRKNCSCSAYTTANIVGKATGCLTWHGELMDTVHFPTPDHEIYVRVDALELAKYAMESDQ FNELSFKLSVLVPSVSSVWVVCILFAYTMFKRWRKWKARKVTERRIGNLFRPSEDSSSLQDSMVTKEMRRSKMYPELPFFSLSVIQAATNNFSSDNNLGK GGFGSVYKGKFSSGEEIAVKRPPRNSRQGLEQFKSEVFLISKLQHRNLVKLYGCCIEEEEQMLIYEYLPYKSLDSLLFVEHLPGGKPFLDWRKRFNIIVG IARGILYLHQDSRFRIIHRDLKTSNILLDAELNPKISDFGMARVLEGDQVEGVTSRIGGTYDYMAPEYAYFGKFFVKSDVFSFGVMLLEIVTGKRINSGF TTHDEDPTALNLIGYVWELWQAERVGDIVHPSLQVSTSTLRCIHIGLSGLEEDPVDRPDMQTLVFMLNSETAPLPPLKRPAFVCAAKSKVELKVAEECSI NDMTFSDTLTR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11340			S-locus lectin protein kinase ...		Lus10030768 [exp]	0	1
AT4G14385			unknown protein		Lus10011821 [exp]	4.5	0.8495
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10030518 [exp]	4.7	0.8621
AT4G01950		ATGPAT3, GPAT3	glycerol-3-phosphate acyltrans...		Lus10001449 [exp]	6.0	0.8614
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10024195 [exp]	6.9	0.8545
AT1G74910			ADP-glucose pyrophosphorylase ...		Lus10015338 [exp]	8.0	0.8414
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10037473 [exp]	14.0	0.8232
AT1G30690			Sec14p-like phosphatidylinosit...		Lus10031752 [exp]	16.8	0.7824
AT3G46060		ARA3, Ara-3, At...	RAB GTPase homolog 8A (.1.2.3)		Lus10005443 [exp]	17.1	0.7818
AT4G14370			Disease resistance protein (TI...		Lus10001352 [exp]	19.2	0.7206
AT4G36850			PQ-loop repeat family protein ...		Lus10016795 [exp]	19.7	0.7956

Compare expression of checked genes

Lus10030768 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.