Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14740 113 / 6e-30 Protein of unknown function (DUF1423) (.1) AT3G63500 74 / 4e-16 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) AT5G48160 55 / 1e-09 OBE2 OBERON2, Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) AT3G07780 48 / 5e-07 OBE1 OBERON1, Protein of unknown function (DUF1423) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013248 [exp] 202 / 7e-65 AT1G14740 466 / 7e-160 Protein of unknown function (DUF1423) (.1) Lus10019718 [exp] 98 / 1e-24 AT3G63500 665 / 0.0 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Lus10016399 [exp] 95 / 2e-23 AT3G63500 717 / 0.0 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Lus10012327 [exp] 60 / 4e-11 AT5G48160 878 / 0.0 OBERON2, Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Lus10006372 [exp] 58 / 2e-10 AT5G48160 871 / 0.0 OBERON2, Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G138100 [exp] 143 / 2e-40 AT1G14740 729 / 0.0 Protein of unknown function (DUF1423) (.1) Potri.010G102600 [exp] 135 / 9e-38 AT1G14740 773 / 0.0 Protein of unknown function (DUF1423) (.1) Potri.001G264100 [exp] 96 / 9e-24 AT3G63500 660 / 0.0 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Potri.009G059000 [exp] 91 / 4e-22 AT3G63500 693 / 0.0 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Potri.002G221500 [exp] 61 / 1e-11 AT5G48160 811 / 0.0 OBERON2, Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Potri.014G164800 [exp] 59 / 4e-11 AT5G48160 859 / 0.0 OBERON2, Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF07227 [flax] [poplar] PHD_Oberon PHD - plant homeodomain finger protein
Representative CDS sequence Show only first row Show all	>Lus10030769 pacid=23155280 polypeptide=Lus10030769 locus=Lus10030769.g ID=Lus10030769.BGIv1.0 annot-version=v1.0 ATGGAAGACGAGTACCAACACTCTCTAGCAGCAAGGAAAGAAGGATTGGAGAGCATTGAAATCATCGTGCGGATCAAACAAGCCGAGGCAAGGATGTTCC AGAACAAGGCAGACGAGGCGAGGAGGGAAGCTGAAGGGCTGAAGCGGATGATCCAGGTGAGGACCGATAAGTACGAGGAAGAGTACTCGCAGAAGTTGTC GAAGCTGTGCTTGCAGGAGACTGAGGAAAGGAGGAGGAAGAAGCTGGAGGAGCTGAAGAAGTTCGAGACCTCTCACTGCGATTACTTCAACATGAAGATG AGGATGCAGGGTGAGATTGCTGGATTGCTAGAGAGAATGGAGGCCACTAAACAACAGAGGGGTTTAGCTGCAGTGAAAAGGGTTCATTCTCATGTGGGTT CTTTATTGTTTCTTGGTTGA
AA sequence Show only first row Show all	>Lus10030769 pacid=23155280 polypeptide=Lus10030769 locus=Lus10030769.g ID=Lus10030769.BGIv1.0 annot-version=v1.0 MEDEYQHSLAARKEGLESIEIIVRIKQAEARMFQNKADEARREAEGLKRMIQVRTDKYEEEYSQKLSKLCLQETEERRRKKLEELKKFETSHCDYFNMKM RMQGEIAGLLERMEATKQQRGLAAVKRVHSHVGSLLFLG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14740			Protein of unknown function (D...		Lus10030769 [exp]	0	1
AT4G27120			unknown protein		Lus10011161 [exp]	2.0	0.9370
AT1G21200	Trihelix		sequence-specific DNA binding ...		Lus10018886 [exp]	5.7	0.9259
AT5G20090			Uncharacterised protein family...		Lus10038250 [exp]	5.8	0.9354
AT5G06340		ATNUDX27	nudix hydrolase homolog 27 (.1...		Lus10021278 [exp]	6.2	0.9163
AT5G06340		ATNUDX27	nudix hydrolase homolog 27 (.1...		Lus10016955 [exp]	6.6	0.9155
AT1G54730			Major facilitator superfamily ...		Lus10029966 [exp]	6.7	0.9294
AT1G68940			Armadillo/beta-catenin-like re...		Lus10029112 [exp]	6.9	0.9340
AT1G04555			unknown protein		Lus10014458 [exp]	7.1	0.9339
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10009916 [exp]	7.3	0.9327
AT5G45110		ATNPR3, NPR3	NPR1-like protein 3 (.1)		Lus10018289 [exp]	9.5	0.9200

Compare expression of checked genes

Lus10030769 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.