Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14740 393 / 8e-133 Protein of unknown function (DUF1423) (.1) AT3G63500 260 / 2e-80 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) AT5G48160 226 / 7e-70 OBE2 OBERON2, Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) AT3G07780 225 / 1e-69 OBE1 OBERON1, Protein of unknown function (DUF1423) (.1) AT5G57380 52 / 2e-07 VIN3 VERNALIZATION INSENSITIVE 3, Fibronectin type III domain-containing protein (.1) AT3G24440 41 / 0.0006 VRN5, VIL1 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013248 [exp] 477 / 2e-170 AT1G14740 466 / 7e-160 Protein of unknown function (DUF1423) (.1) Lus10016399 [exp] 266 / 2e-81 AT3G63500 717 / 0.0 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Lus10019718 [exp] 265 / 2e-80 AT3G63500 665 / 0.0 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Lus10006372 [exp] 231 / 1e-71 AT5G48160 871 / 0.0 OBERON2, Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Lus10012327 [exp] 230 / 3e-71 AT5G48160 878 / 0.0 OBERON2, Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Lus10028170 [exp] 47 / 1e-05 AT5G57380 239 / 8e-72 VERNALIZATION INSENSITIVE 3, Fibronectin type III domain-containing protein (.1) Lus10042869 [exp] 45 / 3e-05 AT5G57380 237 / 5e-71 VERNALIZATION INSENSITIVE 3, Fibronectin type III domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G138100 [exp] 471 / 3e-162 AT1G14740 729 / 0.0 Protein of unknown function (DUF1423) (.1) Potri.010G102600 [exp] 464 / 6e-159 AT1G14740 773 / 0.0 Protein of unknown function (DUF1423) (.1) Potri.001G264100 [exp] 274 / 4e-84 AT3G63500 660 / 0.0 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Potri.009G059000 [exp] 273 / 9e-84 AT3G63500 693 / 0.0 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Potri.014G164800 [exp] 229 / 5e-71 AT5G48160 859 / 0.0 OBERON2, Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Potri.002G221500 [exp] 228 / 1e-70 AT5G48160 811 / 0.0 OBERON2, Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Potri.018G076500 [exp] 42 / 0.0004 AT3G24440 531 / 0.0 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1) Potri.018G091500 [exp] 42 / 0.0005 AT4G30200 612 / 0.0 VIN3-Like 2, vernalization5/VIN3-like 1, vernalization5/VIN3-like (.1.2.3.4) Potri.006G158676 [exp] 41 / 0.0008 AT3G24440 523 / 9e-179 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF07227 [flax] [poplar] PHD_Oberon PHD - plant homeodomain finger protein
Representative CDS sequence Show only first row Show all	>Lus10030770 pacid=23155222 polypeptide=Lus10030770 locus=Lus10030770.g ID=Lus10030770.BGIv1.0 annot-version=v1.0 ATGGCGCAGATTGTTCAGGAACTTACTCCCGAGATGTCGAATTCGATCAAGGAGTACGTAAATCGTCTGGTTTTTACTGCTGATAATCGAGACGAGCTGG TAGGGCTTCAGAGCCGATTGGAGAGGAGGTCTGATTTAATAAAGGAGTCTCTTTTAAAGTGTCACAGAGACCAGCTGGAGATTCTCGTTGCGGTGAAGAT GGGGCTGGCGAGTTTTGTCTCCGGGAAAGCTCGTCTCCCTACCGAGGAGCTCATCGAGGTGTTTTTGTTCACGAGGTGTAGGAACGTGAACTGCAAGAGT ATATTACCCGTTGAGGACTGCGACTGTAAATTCTGCTCCGCAAATAATGGGTTTTGTAGCTCGTGCATGTGTCCCGTATGTATGAAGTTCGATTGCGCTA GCAATACGTGCAGTTGGGTCGGATGTGATGTTTGTTCGCATTGGTGTCATGCTGCTTGCGGGATACAGAAGAATCTCATCAGGCCGGGACCTACTTTGAA AGGTCCCCGGGGGACAAGCGAGATGCAGTTTCATTGTATCGCCTGCGATCATGCTTCTGAGATGTTTGGGTTCGTTAAAGATGTGTATACTTGCTGTGCT AAAGATTGGGGTTATGAGACTCTGTTGAAGGAGCTTGCCTGTGTGAGGAAGATTTTCAAAGGGAGTGATGATTTTAAAGGGAAAGAGCTTCATACCAAGG CTGATGGGTTGATCTCCAAGCTTGAAGATAAACTTATATCTCCTTCAGATGCTTGCCACATCATTCTCATGTTCTTTGACTATGCAGATCGCCTACCGGA TTTCCCTACCGGCCCTTCTGCCAAAGAAATGATGCCTCGTAACACCGAACCCATCACTCGAAAAGAAGCAACTCCCCTTCCATAA
AA sequence Show only first row Show all	>Lus10030770 pacid=23155222 polypeptide=Lus10030770 locus=Lus10030770.g ID=Lus10030770.BGIv1.0 annot-version=v1.0 MAQIVQELTPEMSNSIKEYVNRLVFTADNRDELVGLQSRLERRSDLIKESLLKCHRDQLEILVAVKMGLASFVSGKARLPTEELIEVFLFTRCRNVNCKS ILPVEDCDCKFCSANNGFCSSCMCPVCMKFDCASNTCSWVGCDVCSHWCHAACGIQKNLIRPGPTLKGPRGTSEMQFHCIACDHASEMFGFVKDVYTCCA KDWGYETLLKELACVRKIFKGSDDFKGKELHTKADGLISKLEDKLISPSDACHIILMFFDYADRLPDFPTGPSAKEMMPRNTEPITRKEATPLP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14740			Protein of unknown function (D...		Lus10030770 [exp]	0	1
AT5G66160		JR700, ATRMR1	ARABIDOPSIS THALIANA RECEPTOR ...		Lus10041896 [exp]	2.2	0.8528
AT5G42920		AtTHO5	THO complex, subunit 5 (.1.2)		Lus10006490 [exp]	6.1	0.8741
AT5G60410		ATSIZ1, SIZ1	DNA-binding protein with MIZ/S...		Lus10036123 [exp]	11.7	0.8696
AT5G55600			agenet domain-containing prote...		Lus10007115 [exp]	13.7	0.8547
AT1G60490		PI3K, ATVPS34	PHOSPATIDYLINOSITOL 3-KINASE, ...		Lus10030885 [exp]	17.1	0.8616
AT3G53570		AME2, AFC1	FUS3-complementing gene 1 (.1....		Lus10025301 [exp]	21.5	0.8324
AT5G48160		OBE2	OBERON2, Protein of unknown fu...		Lus10006372 [exp]	24.3	0.8142
AT3G18640	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10003846 [exp]	27.2	0.8432
AT3G29400		ATEXO70E1	exocyst subunit exo70 family p...		Lus10031956 [exp]	27.4	0.8244
AT1G16916			unknown protein		Lus10032325 [exp]	29.1	0.8091

Compare expression of checked genes

Lus10030770 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.