Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14740 133 / 1e-34 Protein of unknown function (DUF1423) (.1) AT4G31460 107 / 8e-28 Ribosomal L28 family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013249 [exp] 139 / 4e-40 AT4G31460 268 / 6e-92 Ribosomal L28 family (.1) Lus10003683 [exp] 133 / 1e-37 AT4G31460 268 / 9e-92 Ribosomal L28 family (.1) Lus10028995 [exp] 127 / 2e-35 AT4G31460 259 / 1e-88 Ribosomal L28 family (.1) Lus10019718 [exp] 42 / 0.0008 AT3G63500 665 / 0.0 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Lus10016399 [exp] 42 / 0.001 AT3G63500 717 / 0.0 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G138100 [exp] 166 / 4e-46 AT1G14740 729 / 0.0 Protein of unknown function (DUF1423) (.1) Potri.010G102600 [exp] 164 / 2e-45 AT1G14740 773 / 0.0 Protein of unknown function (DUF1423) (.1) Potri.018G006900 [exp] 112 / 2e-29 AT4G31460 268 / 8e-92 Ribosomal L28 family (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10030771 pacid=23155415 polypeptide=Lus10030771 locus=Lus10030771.g ID=Lus10030771.BGIv1.0 annot-version=v1.0 ATGGCGTTCAGAGGGAGGGAGATGATGAATAAGGTCCTGAAGAAAGTAGGAGGCAAGAATCTGTCGCCTGCAATCAAGGAATCCCTGAAGAAATCCATAC CTGATAAAAAGGTGGTTATGGGCAGAGCTCAACGTGGTCTTTTCGCGGGGAAGCATATACAGTTCGGGAACCAAATCAGTGAAGATGGTGGAAACAAAAA GAAGGGAAATTTCTCAAGCAATGTTTGTTGGTGGAGGACACCAAGACCACCACCACCCGCCACCGGAACCCCAATCCGACGACCACAAGATCGCTTTCTT CCCCGATTCAAATATGGCGTCTACTGCATCAAACCTCAGGAGCTCACTTTAAGCTACCTTTGCGACAACAACAACAATCATCACTCCAAACTTGGACTCG GTTTAGGTCAAAGGGGGAAAGAACTCCCCAAAGCCGCCACCAGCTCCGATCCTCATCTTGACCAATTTGTCGAGCGCGATTTCCTCAACCTCACCAAGGA CGACGACGAAGCAGAACCAGAAGACGAGAACACGAAGAAGAAGCAGAAGCTTGAAGGCAGTCTCAACCTCTCTTTGGCTCTACCAGATGTCTCTTTCTCC CTCCAAAATGGGGTCAACAACAAGGCTGTACCTTCATCGTCTGCTCAACCTTTCCCAGCTCCTTCGAACAACAACACTCAGACGACTTGCTCCAACGACT TTACCGCTCCCAATTCGCTTTCCTGCTCTTTCTCTCATGCTTTTTCTCACAATCCTAGCTGCTCCATGACTTGTAATTCCACTGAGAATTACTCTGGGAG GGATAATGATAGGACCTGGTGTGGTGGAGAAGGCACTAATGGATCTGTTCACAGCAGGTTTAGACCTGTTGGAGAGGGAGGAATCGTTGCCTTCAATGGC GCAGAATTTGAGAGGTTTGCAGGATGGAGTTAG
AA sequence Show only first row Show all	>Lus10030771 pacid=23155415 polypeptide=Lus10030771 locus=Lus10030771.g ID=Lus10030771.BGIv1.0 annot-version=v1.0 MAFRGREMMNKVLKKVGGKNLSPAIKESLKKSIPDKKVVMGRAQRGLFAGKHIQFGNQISEDGGNKKKGNFSSNVCWWRTPRPPPPATGTPIRRPQDRFL PRFKYGVYCIKPQELTLSYLCDNNNNHHSKLGLGLGQRGKELPKAATSSDPHLDQFVERDFLNLTKDDDEAEPEDENTKKKQKLEGSLNLSLALPDVSFS LQNGVNNKAVPSSSAQPFPAPSNNNTQTTCSNDFTAPNSLSCSFSHAFSHNPSCSMTCNSTENYSGRDNDRTWCGGEGTNGSVHSRFRPVGEGGIVAFNG AEFERFAGWS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14740			Protein of unknown function (D...		Lus10030771 [exp]	0	1
AT3G56680			Single-stranded nucleic acid b...		Lus10043439 [exp]	20.3	0.7074
AT3G15410			Leucine-rich repeat (LRR) fami...		Lus10032668 [exp]	24.1	0.6877
AT3G56840			FAD-dependent oxidoreductase f...		Lus10020854 [exp]	29.9	0.6899
AT3G07940			Calcium-dependent ARF-type GTP...		Lus10002760 [exp]	31.7	0.6696
					Lus10015768 [exp]	47.9	0.6481
AT5G11250			Disease resistance protein (TI...		Lus10007826 [exp]	85.5	0.6355
AT5G45790			Ubiquitin carboxyl-terminal hy...		Lus10014590 [exp]	93.4	0.6121
AT4G28570			Long-chain fatty alcohol dehyd...		Lus10003621 [exp]	103.3	0.6247
AT2G21190			ER lumen protein retaining rec...		Lus10042389 [exp]	209.9	0.5593
AT5G53760		ATMLO11, MLO11	MILDEW RESISTANCE LOCUS O 11, ...		Lus10043085 [exp]	212.6	0.5728

Compare expression of checked genes

Lus10030771 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.