Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01830 1235 / 0 CRE1, AHK4, WOL1, WOL, ATCRE1 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) AT1G27320 944 / 0 AHK3 histidine kinase 3 (.1) AT5G35750 929 / 0 AHK2 histidine kinase 2 (.1) AT2G17820 161 / 4e-40 AHK1, ATHK1 histidine kinase 1 (.1) AT5G10720 152 / 1e-37 CKI2, AHK5 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) AT1G66340 139 / 1e-33 AtETR1, EIN1, ETR1 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) AT2G47430 119 / 4e-27 CKI1 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) AT2G40940 110 / 9e-25 ERS1 ethylene response sensor 1 (.1) AT3G04580 60 / 8e-09 EIN4 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) AT4G18130 59 / 3e-08 PHYE phytochrome E (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013250 [exp] 1954 / 0 AT2G01830 1282 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Lus10028992 [exp] 1428 / 0 AT2G01830 1337 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Lus10003686 [exp] 1417 / 0 AT2G01830 1330 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Lus10015773 [exp] 920 / 0 AT1G27320 1395 / 0.0 histidine kinase 3 (.1) Lus10012325 [exp] 909 / 0 AT5G35750 1278 / 0.0 histidine kinase 2 (.1) Lus10006370 [exp] 899 / 0 AT5G35750 1267 / 0.0 histidine kinase 2 (.1) Lus10037032 [exp] 716 / 0 AT1G27320 1094 / 0.0 histidine kinase 3 (.1) Lus10026917 [exp] 159 / 2e-39 AT5G10720 1063 / 0.0 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) Lus10041891 [exp] 149 / 3e-36 AT2G17820 1561 / 0.0 histidine kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G102900 [exp] 1372 / 0 AT2G01830 1381 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Potri.008G137900 [exp] 1344 / 0 AT2G01830 1390 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Potri.014G164700 [exp] 947 / 0 AT5G35750 1359 / 0.0 histidine kinase 2 (.1) Potri.003G171000 [exp] 914 / 0 AT1G27320 1425 / 0.0 histidine kinase 3 (.1) Potri.001G057400 [exp] 890 / 0 AT1G27320 1384 / 0.0 histidine kinase 3 (.1) Potri.006G270500 [exp] 152 / 1e-37 AT5G10720 725 / 0.0 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) Potri.018G011400 [exp] 152 / 1e-37 AT5G10720 707 / 0.0 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) Potri.007G056400 [exp] 152 / 3e-37 AT2G17820 1475 / 0.0 histidine kinase 1 (.1) Potri.005G111700 [exp] 138 / 5e-33 AT2G17820 1435 / 0.0 histidine kinase 1 (.1) Potri.003G032300 [exp] 126 / 1e-29 AT1G66340 1228 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0025 [flax] [poplar] His_Kinase_A PF00512 [flax] [poplar] HisKA His Kinase A (phospho-acceptor) domain CL0304 [flax] [poplar] CheY PF00072 [flax] [poplar] Response_reg Response regulator receiver domain CL0025 [flax] [poplar] His_Kinase_A PF02518 [flax] [poplar] HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CL0165 [flax] [poplar] Cache PF03924 [flax] [poplar] CHASE CHASE domain
Representative CDS sequence Show only first row Show all	>Lus10030772 pacid=23155398 polypeptide=Lus10030772 locus=Lus10030772.g ID=Lus10030772.BGIv1.0 annot-version=v1.0 ATGGATCTGAAGCTGCAGCAGCAAATTAGCCACGTCCACAAGCGGCATTTGTCGGTGTATGAGAATCAGATGAACCAAATGAAGCACAAGAAGACCAAGT TCACAGTCGGCCCTTACAGGCATTTGTTCCCCAGGGCGCTTCTACTTTGGGTGATGTTTGTTTGTTATCTTTCCATGCGGATATACAATCACTTGGACGA AGACCATAAGACGAGAAGAAAAGAATTGCTTGAAGGCATGTGTGAGCAGAGAGCTGGAATGTTGCAGGACCAGTTCAGTGTCAGTGTTAACCATGTTCAT GCCCTTGCCATTCTCGTCTCCTCTTTCCATTACTTCAAGAACCCCTCAGCCATTGATCAGGAAACTTTTGCCGAGTACACTGCAAGAACAGACTTTGAAC GGCCATTGCTGAGTGGGGTCGCCTATGCAGAAAGAGTACCAAATGCTCAAAGGATGGAGTTTGAGAAAAAGCATGGCTGGACAATTAAGACAATGGAAAG AAAAGCTTCACCAGTTAGAGATGAGTATGCACCAGTAACACTATCTCAAGAGACTGTCTCTTACATTCAGTCCATTGACATGATGTCTGGGGAGGAGGAT AGGGAAAACATTCTGCGTGCTAGGTCTACCGGAAAGGCTGTCATTACAGGCCCTTTCAGGTTGCTTAGCTCGCATCATCTCGGTGTAGTGTTGACATTTC CCGTTTACAAGTCCAAGCTTCCTCTTTTCCCAACTGAAGCGCAACGAATTGAAGCAACGGCGGGATATATTGGTGGTGCCTTTGATGTCGAGTCCCTAGT CGAGAACTTACTCAGGAAACTTAATGGGAATCAAGCAATCTTGGTGAATGTATATGATGTGACCAACTCATCTGATCCTCTAGTCATGTACGGGGACAAA GATCAGGAAGGTGATGAGTCTCTCGTGCTTGAAAACAAACTTGATTTTGGGGATCCATTTCGAAGGCATAAAATGATATGCAGATACCATGAAAAGGCAC CATGGTCAACGCTAGCAATCGGCGTGAGTTCATCAGTCTTTGTGTTTGCACTATTAGCAGGGTATACCTTATACACTGCAGGAACGCATTGTGTGCGAGT CGAGGATGATCGCGATCAAATGCATAATCTGAAAGGCCAAGCTGAAGCTGCTGATGTTGCTAAATCTCGATTTTTGGCTACGGTATCTCATGAAATCAGA ACTCCGATGAATGGCGTCCTCGGAATGCTTGCACTGTTGTTGGACACAGCTCTTAGCTCAACTCAGAGAGATTATGCTCAAACTGCACAAGCCTGCGGAA AGGCACTGATAGCGTTGATAAATGAGGTGCTAGACTGTGCCAAAATCGAAGCCGGAAAGTTAGACCTGGAAGCTGTCCCATTCGACCTTCGATCTATATT AGATGATGTCCTCTCGTTATTCTCCGAGAAGTCTAGGAACAAAGGCATTGAGCTCGCGGTATTTGTGTCCGATAATGTCCCGGACTTGGTTGTTGGGGAT CCTGGAAGATTCAGACAGGTCATCACAAATCTCGTCGGAAACTCCATGAAGTTCACTGAACGAGGGCATATATTTGTAAGAGTTCATCTCGAGGAGCATG CCAAAACTGTGAAAGACTCAGAATCCGATCATAACATTCCAAATGGAGGATCTGATGAAAACGCGACCTTATCTGGTTCTCATCACTTCGAAACCTTAAG TGGCTCAGAGGCTGCTGATAAGTGGAGCAGCTGGGATACCTTCAAATACTTTGTTGCTGAAGAAGGATTCCGACTTGATTGTTGTTCATTGAACGGAAGG GCTTACGAAGCATCGAGGAATAACGTCACCTTGAGAGTATGCGTCGAAGATACAGGAATAGGAATCCCTATGTCCGCTCAAGATCGCGTCTTTATGCCCT TCATGCAGGTAGACAGTTCGACGTCTAGACATTACGGAGGGACTGGTATCGGATTGAGCATCAGCAAGTGCTTGGTTGAACTCATGGATGGGGAGATAAA GTTCATAAGCCGGCCCCAGGTTGGAAGTACATTTACATTCACTGCTGTTCTACAGAGGTGCAGCAACAAAAGCACCACCATAAAGAGTTCTGAAAAACAA AATTCCGAAGATCTTCCTTCGAAGTTCCGAGGACTGAAAGCAGTAATAATAGATGGTAAACCGGTCAGAGCTGCTGTTACCCGATATCATTTGAAGAGGC TTGGTATTATCACTGAAGTTGCGGATAAAGTTTGTAAAAAAGGTTCCTCCTTTCAGCCAGACATTGTTCTTGTCGAGAAAGATTCATGGTTCTCTTGCGA TGATCGTGATTGGAAACAGCACGGACATACTTATAATAAGTCTCCGAAAATGATCCTGATAGCTACGAATATCAGCAGCTCAGAAATGGAGAAAGCGAAA GAAGCAGGCTTTGAAGACACTGTGATCATGAAGCCTTTGAGACCCAGCATGGTCGCTGCATGTCTACAGCAAGTTCTCGGAACAGGAAACAATAAATCGC ACGGAAATGGTGGGCCGTCTCATCTTCAGAGTCTACTGCGTGGCAAGAGAATCCTCGTGGTGGATGACAATAGAGTGAACCGGAGAGTTGCTGCTGGCGC ATTGAAGAAATTCGGCGCAAATGCAGAATGTGCCGAGAGTGGCAAAGCTGCGCTCGAGTTGCTTCAGATACCCCATGGCTTTGATGCTTGCTTCATGGAT ATTCAGATGCCAGAAATGGACGGGTTTGAGGCAACACGTCGAATCAGGCAGATGGAGAAGCAAGCGAATGAGAAACCGATCAGCAACGGGTCGAGTATAG AAGAAGGAAGAGATGGGTGGCATTTGCCAGTATTAGCAATGACTGCTGATCTGATACATGCGACATTTGAGGAGTGCTTGAGTTGTGGGATGGACGGGTA TGTGTCGAAGCCCTTCGAGGAACACAATCTGTACAAGGCTGTCGCAAAGTTCTTCGAAGAAAAGCCCATCTCTGGTCGATAA
AA sequence Show only first row Show all	>Lus10030772 pacid=23155398 polypeptide=Lus10030772 locus=Lus10030772.g ID=Lus10030772.BGIv1.0 annot-version=v1.0 MDLKLQQQISHVHKRHLSVYENQMNQMKHKKTKFTVGPYRHLFPRALLLWVMFVCYLSMRIYNHLDEDHKTRRKELLEGMCEQRAGMLQDQFSVSVNHVH ALAILVSSFHYFKNPSAIDQETFAEYTARTDFERPLLSGVAYAERVPNAQRMEFEKKHGWTIKTMERKASPVRDEYAPVTLSQETVSYIQSIDMMSGEED RENILRARSTGKAVITGPFRLLSSHHLGVVLTFPVYKSKLPLFPTEAQRIEATAGYIGGAFDVESLVENLLRKLNGNQAILVNVYDVTNSSDPLVMYGDK DQEGDESLVLENKLDFGDPFRRHKMICRYHEKAPWSTLAIGVSSSVFVFALLAGYTLYTAGTHCVRVEDDRDQMHNLKGQAEAADVAKSRFLATVSHEIR TPMNGVLGMLALLLDTALSSTQRDYAQTAQACGKALIALINEVLDCAKIEAGKLDLEAVPFDLRSILDDVLSLFSEKSRNKGIELAVFVSDNVPDLVVGD PGRFRQVITNLVGNSMKFTERGHIFVRVHLEEHAKTVKDSESDHNIPNGGSDENATLSGSHHFETLSGSEAADKWSSWDTFKYFVAEEGFRLDCCSLNGR AYEASRNNVTLRVCVEDTGIGIPMSAQDRVFMPFMQVDSSTSRHYGGTGIGLSISKCLVELMDGEIKFISRPQVGSTFTFTAVLQRCSNKSTTIKSSEKQ NSEDLPSKFRGLKAVIIDGKPVRAAVTRYHLKRLGIITEVADKVCKKGSSFQPDIVLVEKDSWFSCDDRDWKQHGHTYNKSPKMILIATNISSSEMEKAK EAGFEDTVIMKPLRPSMVAACLQQVLGTGNNKSHGNGGPSHLQSLLRGKRILVVDDNRVNRRVAAGALKKFGANAECAESGKAALELLQIPHGFDACFMD IQMPEMDGFEATRRIRQMEKQANEKPISNGSSIEEGRDGWHLPVLAMTADLIHATFEECLSCGMDGYVSKPFEEHNLYKAVAKFFEEKPISGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01830		CRE1, AHK4, WOL...	WOODEN LEG 1, WOODEN LEG, CYTO...		Lus10030772 [exp]	0	1
AT2G01830		CRE1, AHK4, WOL...	WOODEN LEG 1, WOODEN LEG, CYTO...		Lus10013250 [exp]	2.4	0.7621
AT2G32010		CVL1	CVP2 like 1 (.1.2)		Lus10006597 [exp]	9.4	0.7820
AT2G19930			RNA-dependent RNA polymerase f...		Lus10012965 [exp]	9.7	0.8086
AT2G32010		CVL1	CVP2 like 1 (.1.2)		Lus10039352 [exp]	11.0	0.7893
AT2G23950			Leucine-rich repeat protein ki...		Lus10019963 [exp]	12.5	0.7897
AT3G11590			unknown protein		Lus10017001 [exp]	23.7	0.7535
AT4G13600			Carbohydrate-binding X8 domain...		Lus10032601 [exp]	24.8	0.7643
AT1G06490		CalS7, ATGSL7, ...	callose synthase 7, Arabidopsi...		Lus10001424 [exp]	26.8	0.7449
AT3G20650			mRNA capping enzyme family pro...		Lus10039035 [exp]	27.1	0.7230
AT1G06490		CalS7, ATGSL7, ...	callose synthase 7, Arabidopsi...		Lus10001056 [exp]	27.9	0.7373

Compare expression of checked genes

Lus10030772 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.