Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22260 605 / 0 MS1 male sterility 1, RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G66170 318 / 2e-98 MMD1 MALE MEIOCYTE DEATH 1, RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G33420 275 / 5e-82 RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G01810 271 / 2e-80 RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G07714 103 / 5e-25 transcription factor-related (.1) ATMG00550 78 / 2e-16 ATMG00550.1, ORF160 unknown protein AT5G23610 50 / 6e-06 unknown protein AT1G32810 48 / 2e-05 RING/FYVE/PHD zinc finger superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013251 [exp] 1287 / 0 AT5G22260 625 / 0.0 male sterility 1, RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10010966 [exp] 343 / 1e-107 AT1G66170 630 / 0.0 MALE MEIOCYTE DEATH 1, RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10031357 [exp] 326 / 4e-101 AT1G66170 620 / 0.0 MALE MEIOCYTE DEATH 1, RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10039160 [exp] 239 / 2e-68 AT1G33420 746 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10013775 [exp] 219 / 3e-61 AT1G33420 650 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10017342 [exp] 46 / 0.0001 AT1G32810 320 / 2e-92 RING/FYVE/PHD zinc finger superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G101300 [exp] 768 / 0 AT5G22260 649 / 0.0 male sterility 1, RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.017G135200 [exp] 358 / 2e-113 AT1G66170 728 / 0.0 MALE MEIOCYTE DEATH 1, RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.008G137200 [exp] 318 / 1e-98 AT2G01810 561 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.004G134700 [exp] 262 / 2e-77 AT1G33420 634 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.013G092000 [exp] 262 / 3e-77 AT1G33420 798 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.T045600 [exp] 252 / 2e-73 AT1G33420 625 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.018G137000 [exp] 251 / 2e-73 AT1G33420 637 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.004G137000 [exp] 51 / 3e-06 AT5G23610 276 / 1e-86 unknown protein Potri.011G152600 [exp] 47 / 4e-05 AT1G32810 238 / 3e-64 RING/FYVE/PHD zinc finger superfamily protein (.2) Potri.T012300 [exp] 47 / 6e-05 AT5G23610 257 / 2e-79 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF00628 [flax] [poplar] PHD PHD-finger
Representative CDS sequence Show only first row Show all	>Lus10030773 pacid=23155329 polypeptide=Lus10030773 locus=Lus10030773.g ID=Lus10030773.BGIv1.0 annot-version=v1.0 ATGTCGAGGCAGCATTCGGACGTGAGTTGTTGTCCGAGGAAGAGGAAGAGAGGAGGAGGAGGAGGGGAGAGGGTGTTTCGGTTCAAGAGCTTCGGGCAGA AGGGCTACCCGATAGAGTTCGAGGGGTCGTCGTTTAGGCAGAACGTGGAGGCGTTGGTCGAGGTTGCGAATTCGGAGAGCGGCAACAACGTTGTTTGGAA CACTGGAGTTGGGAGTATGAGGAGTTGGTCGTTTCAGCTTGAGGTCAATCGTCACCCTCCTTCTCATGTGTTCTTGTTTGTGTTGGAAGAGCTTATTGAG AAGTCGGTTGATCAACATTGCAAGCATTGCCAATATACCGGATGGGGACACCATTTAGTTTGCAACAAGAAGTACCACTTTGTGTTGCCATCCAAGAACA CAATGGCTGCCTTCTTCGATTGCATTGATCTAATCAACTCTTCAACAACACCAAATAGTAATAGTAATAGTAACAATAGCAATATTAGCAAGGGTAAGTT GATCAATTTCGTGGAATTACAAGACCACATCTTGTATGGTGTGTTCCACTCTAATGGATTTGGCCATTTGCTTTGTCTTAACGGAGTCGAATCCGGCTCC TCCCTCCTCCCCGGCCGCCAGATCATGACCTTCTGGGATCATCTCTGTCACTCGCTCAAAGCCAGGAAAGTGAGCATGAATGACATCTCAACAAAGAGGA GCATGGAGTTGAGACTGCTCCACGGCATTGCCTACAGAGCACCATGGTTCGGTTCATGGGGATACAAATTCACCAAAGGAACCTACGGAGTGAATCAGCC AATGTACGAGAAAGCAATAGAGGCACTCAGAGCAATCCCCTTATGCATTATAGTCCACTACTTAGGGAACTCGAACCACGACATCCCGATAATCTTCTCG AGGTACCAAATGCTCTCGGACCATTCCCTCACAACCCTCGGCGACATGTTCCACTTCATGCTAGATCTCCGAACCCGGCTGGCAGAGGAGAATCTCCTAG ATTCCTACACAGGTTCGGGCCTCTTCGTGGAGCAAACTTGCAGGTGGTCCCCGAAACGGATTGAGATGGCCACTCGAGCAATCGTGGAAGCCCTAAAGAG GGCGGAGTTTCGGTGGGTTTCAAGGCAGGAAGTTAGGGATGCGGCTCGTATATATATCGGAGACACGGGGCTTCTCGACTTTGTGCTTAAATCGCTTGGG AATCATATGGTTGGGAACTACTTGGTTCGAAGGTGCTTGAACCCGGTCACGAAAGTGCTCGAGTATTGCTTGGAGGATGTTTCGAACGTTGTTATCCCGG TTCATGAGAGTGGTTCGAACGCCATGATTAATAACAACAACTCGAAAGTGAAGGCGAATCAGCAGCATTACAGGATAAGTAAATCACAACTGATGAAGGA TATGTTCTATCTGTACAAGTACATTCTCAAGGACTATAACATAATATCAAAGCAGCAGCAGAGCAATAACAATAACATCAACAGCAAATTGAACATGGGG ATTCTGAATGTGATACCTACAGCGGTGCGAATCATCCTCGACGCCAAGTATTTCACCAAGGAGTACCACGGTGATCAACCTTTACAAAGAGTTGAGCTTG GAACTGAAGAGAAACTCAGCATTCATTGCACTGTCATGCTACAAAATACCAACAGCATTACCACAATGGAATTCTCACGAGATGATCTGCTGCCACCGTT GGAGTGTGTTCAATTGAGGAGGAACGCGACGTTCGAGGAGCTGAGGATGGAAGTGGAGAGGAGCTTCAGGGAGATGTACTGGGGGATGAAAAACTTAAGC TTGGACAAAGTTGCAAACTTGGAATCAGCAAATGGGAAGGATTTGGTGTTTGGGCAAGTGGAGGTTGGTGGGAAAGTGATATTCCAAGGGAGCAATAATC ACAAAGCTGGAATTGGGTCAAGGAATGAGGATGATATGATAATGGCGTATTACTACGAAGGTGGATTGAGCTGGAACAGAGTTGTGGTTTGCGGGTGTGG AGCTAAGGAAGATGATGGGGAGAGAATGGTGGCTTGTGACATTTGTGAGGTTTGGCAGCATACCAAGTGTGTTGGGATCCCTCAGCATCAGCAAATTCCG CAGATTTTCCTCTGTAAGAGGTGCGAGAACGAGATTGTGATCCTTCCGGCTTTCCCATAA
AA sequence Show only first row Show all	>Lus10030773 pacid=23155329 polypeptide=Lus10030773 locus=Lus10030773.g ID=Lus10030773.BGIv1.0 annot-version=v1.0 MSRQHSDVSCCPRKRKRGGGGGERVFRFKSFGQKGYPIEFEGSSFRQNVEALVEVANSESGNNVVWNTGVGSMRSWSFQLEVNRHPPSHVFLFVLEELIE KSVDQHCKHCQYTGWGHHLVCNKKYHFVLPSKNTMAAFFDCIDLINSSTTPNSNSNSNNSNISKGKLINFVELQDHILYGVFHSNGFGHLLCLNGVESGS SLLPGRQIMTFWDHLCHSLKARKVSMNDISTKRSMELRLLHGIAYRAPWFGSWGYKFTKGTYGVNQPMYEKAIEALRAIPLCIIVHYLGNSNHDIPIIFS RYQMLSDHSLTTLGDMFHFMLDLRTRLAEENLLDSYTGSGLFVEQTCRWSPKRIEMATRAIVEALKRAEFRWVSRQEVRDAARIYIGDTGLLDFVLKSLG NHMVGNYLVRRCLNPVTKVLEYCLEDVSNVVIPVHESGSNAMINNNNSKVKANQQHYRISKSQLMKDMFYLYKYILKDYNIISKQQQSNNNNINSKLNMG ILNVIPTAVRIILDAKYFTKEYHGDQPLQRVELGTEEKLSIHCTVMLQNTNSITTMEFSRDDLLPPLECVQLRRNATFEELRMEVERSFREMYWGMKNLS LDKVANLESANGKDLVFGQVEVGGKVIFQGSNNHKAGIGSRNEDDMIMAYYYEGGLSWNRVVVCGCGAKEDDGERMVACDICEVWQHTKCVGIPQHQQIP QIFLCKRCENEIVILPAFP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22260		MS1	male sterility 1, RING/FYVE/PH...		Lus10030773 [exp]	0	1
AT3G26310		CYP71B35	"cytochrome P450, family 71, s...		Lus10006443 [exp]	1.4	0.8588
AT4G35980			unknown protein		Lus10042598 [exp]	3.0	0.8412
AT2G02340		ATPP2-B8	phloem protein 2-B8 (.1)		Lus10018175 [exp]	4.1	0.7997
AT5G24600			Protein of unknown function, D...		Lus10015590 [exp]	4.5	0.8147
AT1G19250		FMO1	flavin-dependent monooxygenase...		Lus10030750 [exp]	4.6	0.7940
AT1G26480		GF14IOTA, GRF12	general regulatory factor 12 (...		Lus10037089 [exp]	6.3	0.8508
AT3G16970			Plant self-incompatibility pro...		Lus10030565 [exp]	7.7	0.8091
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10020722 [exp]	8.1	0.8127
AT4G04980			unknown protein		Lus10018473 [exp]	9.2	0.7836
AT3G60330		AHA7	H\(+\)-ATPase 7, H\(+\)-ATPase...		Lus10042903 [exp]	10.1	0.8279

Compare expression of checked genes

Lus10030773 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.