Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030778 [exp] 145 / 6e-46 AT5G37660 37 / 0.002 plasmodesmata-located protein 7 (.1.2) Lus10034546 [exp] 96 / 2e-26 AT3G22060 43 / 1e-05 Receptor-like protein kinase-related family protein (.1) Lus10013254 [exp] 94 / 2e-25 ND / Lus10013255 [exp] 92 / 2e-24 ND / Lus10035197 [exp] 88 / 4e-23 ND / Lus10032027 [exp] 85 / 6e-22 ND / Lus10034545 [exp] 82 / 9e-21 ND / Lus10030781 [exp] 81 / 3e-20 ND / Lus10030777 [exp] 80 / 7e-20 AT5G48540 39 / 8e-04 receptor-like protein kinase-related family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G130800 [exp] 43 / 2e-05 AT5G37660 314 / 1e-107 plasmodesmata-located protein 7 (.1.2) Potri.004G086000 [exp] 40 / 0.0003 AT5G37660 301 / 1e-102 plasmodesmata-located protein 7 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10030779 pacid=23155243 polypeptide=Lus10030779 locus=Lus10030779.g ID=Lus10030779.BGIv1.0 annot-version=v1.0 ATGGCTTCTTCTTCTTCTTCGACGATAACCATATTTCTTCTGATCATGATCGTCACTGTTTCCGTTGACTACTCTTCCGCCGACGACGTCACTACATGCG GCAAGGTAGGGCCGGTAGCTCAGGGTGCTTGTAATGGCTTCTACGGTTATTGTGTGACCAACGTGCTGACGGCCTTAAGAGACGTGACCCCATCCATGGG AAACACCGTTTACTCCCGTTCCTTCCCACCGAACGGCGAGAAAGGCGGCGTTACGGGTACCGCGGATTGCGTATATCCGAACAGCGTCAACACGTGCCAG GATTGCCTCCGTGAAGCCAAGAAGTGGCTGGACTCTTCGTGTGCTGCTTCTGATTCCGGCACCTACGTTACAAGTGTTTGTATGATGTATTACAGCCAGA TCCCCAACTAA
AA sequence Show only first row Show all	>Lus10030779 pacid=23155243 polypeptide=Lus10030779 locus=Lus10030779.g ID=Lus10030779.BGIv1.0 annot-version=v1.0 MASSSSSTITIFLLIMIVTVSVDYSSADDVTTCGKVGPVAQGACNGFYGYCVTNVLTALRDVTPSMGNTVYSRSFPPNGEKGGVTGTADCVYPNSVNTCQ DCLREAKKWLDSSCAASDSGTYVTSVCMMYYSQIPN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70690		HWI1, PDLP5	PLASMODESMATA-LOCATED PROTEIN ...		Lus10030779 [exp]	0	1
AT5G51160			Ankyrin repeat family protein ...		Lus10034255 [exp]	1.0	0.9046
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10012880 [exp]	6.3	0.8043
AT3G57240		BG3	"beta-1,3-glucanase 3", beta-1...		Lus10002807 [exp]	6.9	0.7370
AT2G36760		UGT73C2	UDP-glucosyl transferase 73C2 ...		Lus10014404 [exp]	17.1	0.6702
AT2G47540			Pollen Ole e 1 allergen and ex...		Lus10008213 [exp]	18.6	0.6995
AT4G37530			Peroxidase superfamily protein...		Lus10011079 [exp]	28.0	0.7854
AT1G14600	GARP		Homeodomain-like superfamily p...		Lus10029808 [exp]	33.0	0.6969
					Lus10029807 [exp]	37.8	0.7694
AT1G32730			unknown protein		Lus10000258 [exp]	39.3	0.6700
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Lus10021193 [exp]	43.5	0.7572

Compare expression of checked genes

Lus10030779 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.