Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02790 206 / 2e-58 IQD29 IQ-domain 29 (.1) AT1G18840 139 / 6e-35 IQD30 IQ-domain 30 (.1.2) AT1G14380 129 / 1e-31 IQD28 IQ-domain 28 (.1.2.3) AT1G74690 100 / 4e-22 IQD31 IQ-domain 31 (.1) AT1G19870 81 / 7e-16 IQD32 IQ-domain 32 (.1) AT4G14750 63 / 3e-10 IQD19 IQ-domain 19 (.1) AT5G13460 55 / 1e-07 IQD11 IQ-domain 11 (.1) AT3G16490 52 / 5e-07 IQD26 IQ-domain 26 (.1) AT3G51380 49 / 5e-07 IQD20 IQ-domain 20 (.1) AT4G00820 52 / 7e-07 IQD17 IQ-domain 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013261 [exp] 904 / 0 AT1G14380 212 / 7e-61 IQ-domain 28 (.1.2.3) Lus10004263 [exp] 135 / 2e-33 AT1G74690 407 / 6e-135 IQ-domain 31 (.1) Lus10042173 [exp] 134 / 5e-33 AT1G74690 400 / 3e-132 IQ-domain 31 (.1) Lus10033167 [exp] 84 / 2e-16 AT1G19870 211 / 4e-57 IQ-domain 32 (.1) Lus10006613 [exp] 63 / 4e-10 AT4G14750 295 / 6e-96 IQ-domain 19 (.1) Lus10014870 [exp] 63 / 5e-10 AT2G26180 249 / 5e-74 IQ-domain 6 (.1) Lus10021904 [exp] 59 / 5e-09 AT4G14750 314 / 2e-103 IQ-domain 19 (.1) Lus10041188 [exp] 57 / 3e-08 AT4G14750 288 / 2e-93 IQ-domain 19 (.1) Lus10010104 [exp] 54 / 4e-07 AT1G01110 434 / 3e-147 IQ-domain 18 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G063600 [exp] 228 / 6e-67 AT1G74690 407 / 2e-135 IQ-domain 31 (.1) Potri.017G079600 [exp] 178 / 7e-49 AT1G74690 225 / 2e-66 IQ-domain 31 (.1) Potri.012G069900 [exp] 132 / 1e-32 AT1G74690 387 / 8e-128 IQ-domain 31 (.1) Potri.002G025200 [exp] 83 / 2e-16 AT1G19870 315 / 5e-95 IQ-domain 32 (.1) Potri.005G236200 [exp] 83 / 3e-16 AT1G19870 340 / 2e-104 IQ-domain 32 (.1) Potri.008G156700 [exp] 63 / 3e-10 AT4G14750 307 / 6e-101 IQ-domain 19 (.1) Potri.006G226600 [exp] 62 / 5e-10 AT2G26180 386 / 1e-131 IQ-domain 6 (.1) Potri.010G082600 [exp] 59 / 6e-09 AT4G14750 261 / 2e-83 IQ-domain 19 (.1) Potri.018G062001 [exp] 56 / 3e-08 AT2G26180 260 / 2e-85 IQ-domain 6 (.1) Potri.003G042700 [exp] 56 / 3e-08 AT1G72670 223 / 3e-68 IQ-domain 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00612 [flax] [poplar] IQ IQ calmodulin-binding motif
Representative CDS sequence Show only first row Show all	>Lus10030784 pacid=23155337 polypeptide=Lus10030784 locus=Lus10030784.g ID=Lus10030784.BGIv1.0 annot-version=v1.0 ATGGGGACATCTCCTGGGAAGTGGTTGAAGAGTTTAATCCGCGGGAAGAAGTCATCGAAGTCCAGTCTTTCCAAAGAAAAGAATGCGTTGGTGAGTAAAG TTTGTTGTTGTTGTTGTTCCTCTTTGTGGCCTTATGATGATCAAGATAAGAACTTGTTTCAATTTCTGATACTTTGTTACTGTGGTTATTTGGCTACTAA GAAACTGAACAATGGGGAGGCGCTGGTTTCCTCCAAAGTCCCTGTGTCGAATTCAATGGAAAGTCCTCAAACCCTCACGATTTCGCACCCAATTCCCGTT ATTGGAGCTGGAAGTGTAGTGAACTCGGCACATGCTGAAACTGCCGAGTCACGAAATGAGAAGGCTGATGTTTTGTGTGGCAAAGAAGATGGTGCCAGTC CAGAAACAAGTCTGGAACAAGTTTCTGAGATAGTGAGGGTTGAGGATGCTGCAACAAAGGCACAAGAGGAAGTTACTGGATCTCTGGCTCCCGATGAAGT CGATAAGGACAGAGGCATCGTAAGGTTGCAGGCAGTCATTCGTGGTCACTTGGTTAGGAGGCAAGCTGTTGCTACCCTAAACTGTGCTTGGGCAATCGTT AAGTTTCAAGCACTAGTTCGGGGTCAAAAGGTTAGATGTTGTTCTAGTCTTCCGGTCGAAAGCCAAGACACGATCACCCGGGCAAAACTTCGGGCTATGA GTGCTGCTTCTGGAAATCCTAGAAGCACGTTGAAGGATCAGAATTTCGAGAATGCATTTGTCCGGAAGCTTTTAACTTCAACAGCTAGTGCAATGCCTCT AGCCCTCCAGTACAGTCCTGGGGAACCGAACTCGGTTATGGAGTGGTTGAACCGTTGGACAAGATCATGCTTCTGGGAACATGTTTCGGAACAGAAGATG GTCCAACCGGAATCAGAGTCCCTCATCAAGCAAGAGGGTTTAGAAAAAGTGGAAGCTCAACAAGGCAGGCAAAAGCAACCTGTGAAGAAATCATCTAGTG GTGCTAATGTTCCAAATGACATACATGGGAAGATATCGGAGTCCAGCAAACCGAAACGTATTCCCAGGAAGCCTTTGAAGCTTCCTGTAGATATGGGGAA CAAGCTTCCGGAAACTGCATCAGTTAAGGGAAAGCAGGCTTCGAGAAAGGTTTCTGGTTCTGAAAAAGTTGAAGCTGATGGGATTAGGCCAAAGAGAAAT GTGAAGAGGATATCTGCTGATGTGGAGCAGGACAGTCAAATTTCTACTGATGTGGCGAAGGATGTTGTTCCGTTGGCAGTTCTGAGTCCAGAAGTGAAGG ATGTTGAGGAGCATTCGCTTAATGGTGTGCTGAGTAATGTACAAGAGAATAATAATATACTTCAGTTGGGACCAATTAATGATGCAATTGGGGGAGGAAA TGACAACTTGAAAACGAGCCAAAGAAGAGCGTCATTGCCGGCCAATGTCGATCAGCAGGAGAATGGGGTACTTGGTACACCGAAGCTTCCGAGCTATATG ACACCAACACAATCTGCAAAGGCTAAGCTGAGAGGCACGGGATCTCCGGCCCTTCCTCAAGACGGAATCGAGAAAACTGGTAGCGCCGCCACCACTAGAA GACATTCACTTCCGTCTTCCATCAACGAGAAGTGTGTTTCCATGTCGCCTAGAGCTTACAGACAAGTCCATTCCGCTAGCAAAGGGTTTATCAGGAGCGA CCGGTCCCTAACTTCTTCCAGAGATGGCAGTGGTAAGTAA
AA sequence Show only first row Show all	>Lus10030784 pacid=23155337 polypeptide=Lus10030784 locus=Lus10030784.g ID=Lus10030784.BGIv1.0 annot-version=v1.0 MGTSPGKWLKSLIRGKKSSKSSLSKEKNALVSKVCCCCCSSLWPYDDQDKNLFQFLILCYCGYLATKKLNNGEALVSSKVPVSNSMESPQTLTISHPIPV IGAGSVVNSAHAETAESRNEKADVLCGKEDGASPETSLEQVSEIVRVEDAATKAQEEVTGSLAPDEVDKDRGIVRLQAVIRGHLVRRQAVATLNCAWAIV KFQALVRGQKVRCCSSLPVESQDTITRAKLRAMSAASGNPRSTLKDQNFENAFVRKLLTSTASAMPLALQYSPGEPNSVMEWLNRWTRSCFWEHVSEQKM VQPESESLIKQEGLEKVEAQQGRQKQPVKKSSSGANVPNDIHGKISESSKPKRIPRKPLKLPVDMGNKLPETASVKGKQASRKVSGSEKVEADGIRPKRN VKRISADVEQDSQISTDVAKDVVPLAVLSPEVKDVEEHSLNGVLSNVQENNNILQLGPINDAIGGGNDNLKTSQRRASLPANVDQQENGVLGTPKLPSYM TPTQSAKAKLRGTGSPALPQDGIEKTGSAATTRRHSLPSSINEKCVSMSPRAYRQVHSASKGFIRSDRSLTSSRDGSGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02790		IQD29	IQ-domain 29 (.1)		Lus10030784 [exp]	0	1
AT1G14380		IQD28	IQ-domain 28 (.1.2.3)		Lus10013261 [exp]	1.0	0.9408
AT1G08760			Plant protein of unknown funct...		Lus10026806 [exp]	1.4	0.9004
AT4G35790		ATPLDDELTA	ARABIDOPSIS THALIANA PHOSPHOLI...		Lus10041855 [exp]	2.0	0.8872
AT3G58460		ATRBL15	RHOMBOID-like protein 15 (.1.2...		Lus10021092 [exp]	3.3	0.8581
AT1G28440		HSL1	HAESA-like 1 (.1)		Lus10015393 [exp]	4.6	0.8757
AT1G49890		QWRF2	QWRF domain containing 2, Fami...		Lus10014636 [exp]	4.9	0.8787
AT5G16730			Plant protein of unknown funct...		Lus10009550 [exp]	6.5	0.8959
AT1G75500		WAT1	Walls Are Thin 1 (.1.2)		Lus10024301 [exp]	6.7	0.8842
AT1G74690		IQD31	IQ-domain 31 (.1)		Lus10042173 [exp]	12.0	0.8726
AT2G26680			unknown protein		Lus10019418 [exp]	12.8	0.8428

Compare expression of checked genes

Lus10030784 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.