Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14390 612 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G02780 551 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G03770 431 / 2e-140 Leucine-rich repeat protein kinase family protein (.1.2) AT5G63410 330 / 5e-103 Leucine-rich repeat protein kinase family protein (.1) AT5G14210 321 / 2e-98 Leucine-rich repeat protein kinase family protein (.1) AT4G20140 161 / 1e-40 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G59700 151 / 9e-38 Protein kinase superfamily protein (.1) AT4G39110 150 / 1e-37 Malectin/receptor-like protein kinase family protein (.1) AT2G21480 150 / 2e-37 Malectin/receptor-like protein kinase family protein (.1) AT5G61350 149 / 5e-37 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013262 [exp] 1264 / 0 AT1G14390 632 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10005689 [exp] 449 / 3e-147 AT3G03770 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10020303 [exp] 389 / 4e-124 AT3G03770 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10035225 [exp] 335 / 8e-104 AT5G14210 854 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10032058 [exp] 332 / 1e-102 AT5G14210 873 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033407 [exp] 328 / 4e-101 AT3G03770 666 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10032059 [exp] 324 / 2e-99 AT5G14210 870 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10034873 [exp] 317 / 8e-97 AT3G03770 668 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10022340 [exp] 310 / 2e-94 AT5G14210 876 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G147700 [exp] 776 / 0 AT1G14390 675 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G039000 [exp] 417 / 7e-135 AT3G03770 933 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.013G064300 [exp] 405 / 3e-130 AT3G03770 896 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.008G014300 [exp] 366 / 5e-116 AT3G03770 692 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.015G093100 [exp] 338 / 3e-105 AT5G14210 681 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G333300 [exp] 331 / 1e-102 AT5G14210 854 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G095600 [exp] 330 / 4e-102 AT5G14210 720 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.015G141200 [exp] 155 / 6e-39 AT5G07280 1347 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.015G061700 [exp] 154 / 1e-38 AT5G61350 1020 / 0.0 Protein kinase superfamily protein (.1) Potri.009G120400 [exp] 153 / 2e-38 AT4G39110 1210 / 0.0 Malectin/receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10030785 pacid=23155401 polypeptide=Lus10030785 locus=Lus10030785.g ID=Lus10030785.BGIv1.0 annot-version=v1.0 ATGCAGAGCTATTTCAGGGGAATGCATTTCCTTCCCCTGCTTCTTCTTCTTCTTCTTCCATTCCGATTCACAATATCACAGCAGCTACCATGGAGCGAAA CCAGAGTCCTCCTACACATCCAGAAGCTTCTCGAATACCCCGCACAGCTCAATTCATGGACCAACTGGACAACAAACTTCTGCTACTCCCCTGTTTCTTC ACCTTCGTTCAGGATCACCTGCACAAACAACCATGTCACGGAACTCACCATCGTTGGCAACCAAACCTCTCCCTCTCAGCTCCCCAACCCGATCCCTCCC GGAAAGCAGTACGCCCTCTCCGGTGGATTTTCCATCGATTCGCTCTTCACTGATTTGACCAAGCTCCCCAATTTGCAGAGCCTGTCGCTTGTCAAGCTCG GAATGTGGGGTCCGCTCCCTTCCCAGAAACTTGGCAGGTTCGGTTCGATTCGGGTTTTGAATCTCAGTTCCAATTTCATCTCCGGTCCGATCCCTTCCGG GATCGGTCCGAAAGGGTTGAAAAGTCTTGTTCTTGCTGATAATCTGATGAACGGGAGCGTTCCGGATCTAAGCGGGTTGGCTTCTTCTCTGCAAGATTTA AATCTGAGCAGGAATCTTTTGAGATCTCAGATTCCTTCAGGGTTTAAGAGGATGAATAGCCTCCAGAGATTGGATTTGTCAGGAAACAAGCTGATCGGGC CGATTCCGTTTGCGATTTTCTCTCTGCCTTTGATTCAATCCGTTGACTTGAGTGGGAATCGGCTCAGTGGAACAGTTGCCAGCAAGATTCCTTGCAGCTC TCAGCTCCAGCTCTTGAACATTTCCGACAACCTTTTGGTGGGCGGTCTCCCCACCTGCTCCGATTCGAAGAAGAATCGGAGAGTGGTAGCTTTGTGGAAC TGCTTGTCTGGTGGTGTGAAGACTAAGCAGCAGCAGCATCCGTACTCTTTCTGTCACAAGGAAGCATTGGCTGTTAAGCCACCAAACACGGGTAAAAATG GTGGAAAGCAGAAATCTTCCACCGTTGGACTTGGAGTCATAATTGGGATCGTTGGAGGAGCTTTGGGGCTCACCGTTGTGCTCGGGATCGCGATTTGTTT GATCGTCAGGAGATCGAACTATGCAGATTTTCCATCTGGTGATGATCGTAGGTTCGAGCCCTCCTTGGCTGACAAAATGTCCATTCGGAGCTCAGTCCAC ACCTTCGAGTCCAGGAGGGTGCCTAAGACAATGAGATCGGCAGCGATTGGGCTGCCGTCGTATCACAATTTCACGTTGGAGGAGATCGAAGACGCCACGA ACGGCTTCGACCCGTTGAACTTCGTCGGAGAGGAACTTCAGGGGCAGCTCTACAAAGGCTGCCTTGTCGACGGGCTAGGAGTTCTAGTAAAATGCGTGAA GCTGAAACACAAGAGCCTGTCTCAGAACGTGATGCAACACATAGAAGTGCTGTCAAAGCTAAGGCATCTGCATTTGGTCAGTGTTCTGGGGCACTGCATT GTCACTTTCCAGGATCACCCCACCACAGTAGCAACTCTTTTCGTCGTTTTCGAGCACGTCACCAACGGGTCCCTCCTGGAATATATTACAGACAGACGGA AGAGAGAGGTGCTGAAATGGCCGCAAAGGATGGCGATTACGATGGGAGTCGCCAGGGGGATCCATTTCTTGCACACGGGAGTAGCACCTGGGATTTACGG GAACGATTTGAAGATCGAAAATGTGCTGCTGGACGAAAGCCTCACCGCAAAACTCAGCAACTATACGCTTCCTTTGCCAGCCAAAATTGGTGCGGAGAGT CCGTTGAAAGGGCAAGACGTGAACAGCATCGAAAATCCGGAAAAAGAAGACGTTTACCAGCTGGGAACGATCGTGCTTCAACTGATCACAGGCAAACACG TAAGAACCTCGGAGGAAGTGGAGGAACTCAAGACACAGCTGGAGAAGGGCTTGGCGGAGGGTCAATTAAAGCTGAGAGCTATGGCGGATCCTTCCACGAA AGGAACTTACGCCTACGACTCGTTGAGAACTGCGGTAGAGATCACCATCAACTGCCTCTCGAAAGACCCCAGTAGCCGCCCTTCGATAGAAGATGTGTTG TGGAATTTGCAGTATTCGAGCCAAGTTCAGGAAGGATGGACCAGCAGCGGGAACCTAGGAACTTCTCAGACTTAG
AA sequence Show only first row Show all	>Lus10030785 pacid=23155401 polypeptide=Lus10030785 locus=Lus10030785.g ID=Lus10030785.BGIv1.0 annot-version=v1.0 MQSYFRGMHFLPLLLLLLLPFRFTISQQLPWSETRVLLHIQKLLEYPAQLNSWTNWTTNFCYSPVSSPSFRITCTNNHVTELTIVGNQTSPSQLPNPIPP GKQYALSGGFSIDSLFTDLTKLPNLQSLSLVKLGMWGPLPSQKLGRFGSIRVLNLSSNFISGPIPSGIGPKGLKSLVLADNLMNGSVPDLSGLASSLQDL NLSRNLLRSQIPSGFKRMNSLQRLDLSGNKLIGPIPFAIFSLPLIQSVDLSGNRLSGTVASKIPCSSQLQLLNISDNLLVGGLPTCSDSKKNRRVVALWN CLSGGVKTKQQQHPYSFCHKEALAVKPPNTGKNGGKQKSSTVGLGVIIGIVGGALGLTVVLGIAICLIVRRSNYADFPSGDDRRFEPSLADKMSIRSSVH TFESRRVPKTMRSAAIGLPSYHNFTLEEIEDATNGFDPLNFVGEELQGQLYKGCLVDGLGVLVKCVKLKHKSLSQNVMQHIEVLSKLRHLHLVSVLGHCI VTFQDHPTTVATLFVVFEHVTNGSLLEYITDRRKREVLKWPQRMAITMGVARGIHFLHTGVAPGIYGNDLKIENVLLDESLTAKLSNYTLPLPAKIGAES PLKGQDVNSIENPEKEDVYQLGTIVLQLITGKHVRTSEEVEELKTQLEKGLAEGQLKLRAMADPSTKGTYAYDSLRTAVEITINCLSKDPSSRPSIEDVL WNLQYSSQVQEGWTSSGNLGTSQT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14390			Leucine-rich repeat protein ki...		Lus10030785 [exp]	0	1
AT3G10980		SAG20, WI12, AT...	PLAC8 family protein (.1)		Lus10010219 [exp]	3.0	0.7473
AT4G17350			Plant protein of unknown funct...		Lus10004734 [exp]	4.8	0.6939
AT2G03500	GARP		Homeodomain-like superfamily p...		Lus10012056 [exp]	5.3	0.7390
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Lus10032854 [exp]	5.7	0.7730
AT4G35320			unknown protein		Lus10022985 [exp]	8.5	0.7549
AT2G24290			Protein of unknown function (D...		Lus10019053 [exp]	13.2	0.7414
AT1G27200			Domain of unknown function (DU...		Lus10036676 [exp]	15.1	0.7397
AT1G31850			S-adenosyl-L-methionine-depend...		Lus10033277 [exp]	17.0	0.7278
AT3G04910		ATWNK1, ZIK4, W...	with no lysine (K) kinase 1 (....		Lus10020236 [exp]	17.1	0.7026
AT4G25315			Expressed protein (.1.2)		Lus10014065 [exp]	19.1	0.6842

Compare expression of checked genes

Lus10030785 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.