Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02750 633 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G13600 338 / 3e-107 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G27110 334 / 1e-105 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G31430 327 / 3e-104 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT2G29760 326 / 6e-102 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 328 / 2e-101 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G11290 325 / 6e-101 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G03380 318 / 1e-99 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22690 319 / 2e-98 unknown protein AT3G09040 320 / 2e-97 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013264 [exp] 1190 / 0 AT2G02750 633 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10000073 [exp] 613 / 0 AT2G02750 370 / 8e-125 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10002288 [exp] 343 / 1e-109 AT1G31430 689 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10004052 [exp] 341 / 4e-109 AT1G31430 684 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10030249 [exp] 330 / 8e-104 AT3G25970 747 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10009269 [exp] 328 / 9e-104 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015898 [exp] 330 / 1e-103 AT2G13600 899 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033858 [exp] 322 / 6e-102 AT1G08070 422 / 4e-139 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008967 [exp] 327 / 6e-101 AT4G21300 876 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G088600 [exp] 361 / 3e-116 AT1G31430 690 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.010G083700 [exp] 363 / 3e-115 AT3G22690 1050 / 0.0 unknown protein Potri.004G178200 [exp] 347 / 2e-109 AT4G35130 919 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G187800 [exp] 341 / 4e-105 AT3G09040 1201 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G466066 [exp] 337 / 4e-105 AT4G33990 1067 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G245300 [exp] 331 / 1e-102 AT3G22690 570 / 0.0 unknown protein Potri.003G031600 [exp] 327 / 2e-102 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G124400 [exp] 325 / 3e-102 AT5G39350 785 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G191000 [exp] 327 / 1e-101 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G041200 [exp] 325 / 2e-100 AT5G16860 1083 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10030787 pacid=23155271 polypeptide=Lus10030787 locus=Lus10030787.g ID=Lus10030787.BGIv1.0 annot-version=v1.0 ATGAAGAGAAACCGCCAAGTAATCGAACTCGTCGCTGATGGGCTGTACAAGAAAGCCATAGCCCTACACTCCCAGCTACATTCCGCATCACTTCCCGCCA CCCGGTTCACGTTCCCGCCTCTTCTCAAAGCATGCGTCAAGCTCAATTCACCTCTCCATGGCCAAATGCTTCATTCCCAGCTCCTTAAAACGGGGTTCCA TCACCACACACATTCCTCCACAGCGCTGGCCAACATGTACATGAAGCTGAAATTTCCTCACGTAGACGCAGTCAAAGTGTTCGACGAAATGCATCACCGG AACTTGGCCTCGCTTAATGCCGCGATCTCTGCATTCGCGAGTAGTGGGGATTGTGAAAAGGCGTTCCTTCTGTTTCGAGAAGTGAGGGGTGCTGGATTGG TGCCGAATTCTGTTACTGTGGCGAGTGTTTTGATTGGTTGTCGAAATGGTGAAGTTTGCCGGCAGGTGCAATGCTCGGCGATCAAGTTGGGAGTGGATGG TGATGTCTACGTTGGGACGGCGATGGTAACTGTTTATAGTGGATGTGGAGAGATTTTGGTGGCTTGCAAATTGTTTGGAGAAATGCCTGATAAGAATGAG GTGAGCTACAATGCTTTGTTATCTGGGTTTCTGGATAATGGTAAGCCAGACATGGTCTTGAACGTATTTAAGGATATGAGAGAGAGCTTAAACGAAAGAC CGAATTTGGTTACATTGATGTCTGTTCTTTCTGCTTGTTCTAGTCTTTCGTATCTTCAGTTTGGAAAGCAGGTTCATGGATTCATGGCTAAGACAATGGC GTTGGTACTAGATGTTAAACTTGGGACAGCCCTTGTTGACATGTATTGCAAATGCAGGTCTTGGAGGTGGGCGTATGATGTTTTTAATGAACTGGGTGCT AATAATAGGAACTTGGTCACATGGAATTCGATGATTTCCGGCCTGATGTTGAATGGTGAAAGTGACACTGCTGCTGAGTTGTTCGGACTATTGGAATCCC AAGGGTTGGAACCTGATTCAGTAACATGGAACTCGATGATCAGTGGGTTTTCTCAGTTGGATATGGCCAGTGAAGCTTTTCGTTTCTTCAGAAAGATGCA ATCTTCTGGAACTTTTCCCAGTTTGAAGTCTGTCACAAGTTTACTGCGAGCTTGTGCTTCTTTGTTGGCTATGCAACATGGAAGAGAGATACACGGGCAT GCTAACAGAACTAACCTTCATACCGATGAATTTATGGCCACTGCTCTAATTGACCTGTATATGAAATGTGGCAACTTTTCTTGGGCAAGAAAGATCTTTG ATGGGTTTTCCGTGAAGCCAAGTGACCCAGCATTTTGGAATGTCATGATCTCAGGATATGGAGCAAACGGAGACAGTAAATCAGCTTTCGAGGTTTTTTA TCAGATGCTAAAGGAGAAGGTGAAGCCGAATTCTGGCACTTTCACTGCTATTCTGTCTGTGTGCAGTCACACTGGACAGGTTGACCAAGGATGGAAGGTT TTCAAAATTCTGACTGATGAACATGGCTTGAAACCGAAAGCAGAGCATTTTGGTTGCATGATTGACCTTCTGGGTCGATCTGGCCGATTGGATGAAGCTA GTAAGCTATTGGAGGGTATACAAGAGCCATCTACGTCAGTATTTGCGTCATTGCTTGGCGCTTGTAGGCATCATTTGCAGCCTGACCTGGGGGAACAAGT GGCTATGAAGCTTGTAGAGTTGGAACCAGATGATCCAACTCCTATTGTGATGCTCTCAAATATATATGCAGGTGTAGGAAGGTGGCAGGATGCAGAAAAA ATCAGAATGATATTAAACAGCAGAAAGCTGAAAAAACTTCCCGGTTATAGTTTAATGGGAGTTGCATAA
AA sequence Show only first row Show all	>Lus10030787 pacid=23155271 polypeptide=Lus10030787 locus=Lus10030787.g ID=Lus10030787.BGIv1.0 annot-version=v1.0 MKRNRQVIELVADGLYKKAIALHSQLHSASLPATRFTFPPLLKACVKLNSPLHGQMLHSQLLKTGFHHHTHSSTALANMYMKLKFPHVDAVKVFDEMHHR NLASLNAAISAFASSGDCEKAFLLFREVRGAGLVPNSVTVASVLIGCRNGEVCRQVQCSAIKLGVDGDVYVGTAMVTVYSGCGEILVACKLFGEMPDKNE VSYNALLSGFLDNGKPDMVLNVFKDMRESLNERPNLVTLMSVLSACSSLSYLQFGKQVHGFMAKTMALVLDVKLGTALVDMYCKCRSWRWAYDVFNELGA NNRNLVTWNSMISGLMLNGESDTAAELFGLLESQGLEPDSVTWNSMISGFSQLDMASEAFRFFRKMQSSGTFPSLKSVTSLLRACASLLAMQHGREIHGH ANRTNLHTDEFMATALIDLYMKCGNFSWARKIFDGFSVKPSDPAFWNVMISGYGANGDSKSAFEVFYQMLKEKVKPNSGTFTAILSVCSHTGQVDQGWKV FKILTDEHGLKPKAEHFGCMIDLLGRSGRLDEASKLLEGIQEPSTSVFASLLGACRHHLQPDLGEQVAMKLVELEPDDPTPIVMLSNIYAGVGRWQDAEK IRMILNSRKLKKLPGYSLMGVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02750			Pentatricopeptide repeat (PPR)...		Lus10030787 [exp]	0	1
AT3G03710		PDE326, PNP, RI...	resistant to inhibition with F...		Lus10001331 [exp]	2.0	0.9512
AT1G16480			Tetratricopeptide repeat (TPR)...		Lus10008829 [exp]	2.0	0.9366
AT1G68552		CPuORF53	conserved peptide upstream ope...		Lus10035017 [exp]	4.2	0.9320
AT3G20440		EMB2729, BE1	EMBRYO DEFECTIVE 2729, BRANCHI...		Lus10003675 [exp]	5.7	0.9241
AT3G11460			Pentatricopeptide repeat (PPR)...		Lus10022703 [exp]	6.3	0.9210
AT1G06950		ATTIC110, TIC11...	ARABIDOPSIS THALIANA TRANSLOCO...		Lus10026424 [exp]	7.0	0.9260
AT1G68552		CPuORF53	conserved peptide upstream ope...		Lus10021677 [exp]	7.3	0.9222
ATCG00180		ATCG00180.1, RP...	DNA-directed RNA polymerase fa...		Lus10009499 [exp]	7.4	0.9269
AT4G31210			DNA topoisomerase, type IA, co...		Lus10026991 [exp]	7.5	0.9295
					Lus10036489 [exp]	12.0	0.9179

Compare expression of checked genes

Lus10030787 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.